TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAA
TTCTCATCAATCAACCGACAAAATTATAGATGGTATTCTGTTTGTTCAAC
TAACAGTGTTGAAGAAACAATGAAATTTTCATAGAATATTTAAAAAACAT
TCCTTATACCAATGGACTGGAAAAGGTCTCCTTTTACCAACTTTTTTTCT
ACTCATGCATTCTTTACAGTATCTTTCACATCTGTGAAAACTGGCACTAC
TACATGTCTCACAGTATGAGTTTTGACAAACAATTTTTAGTGAGACTTTG
CGATACAAATATATACAAAGTTGTATAGGCAGAGATTATTTTATGCTATA
TAGAAGGTTGTGCTAAAATAGTGATGAGGTATATCTTAAAATTACCAATT
CAATAGTCTCTTAATTTTTCAACTGATTAACTATTTAAAATAATTTGACA
AGAAAGACATTTGTCAAAATATGCATACTGACTCTACCTTTGGTGCACCT
GTATGTTTTGATATATTGGAACATTTATGATTATTTTCTATAATATAATT
TTTATTTATAGCGTCCACTGCTTCATGCTACTTATAAATGTTTTTATAGT
TTTATATTGTTTTATAAAATTTGGGGAAAATTACTTATAAATGTTGCCTA
ATTTTAACCCCTCTAGAAAAAACAATGGGATTGGAAGACTACCTATTTTT
AGAACAAAACCCTGGAAAACTCCCCCTTGCCTTTAAATTCTGACCGGAAA
AAAAAATTTGCCCAG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGCTCCTGG
GCTTTATTTGGCTGGGAGACTCTTAATGACTGCTTCTATTTCTTTAGGGG
ATATGGGACTGTTTAGATTGTTAACTTGATACTGATTTAACTTTGGTACC
TAGTATCTGTCTAGAAATTTGTCCATTTTGTCCAGGTTTTCCAGTTTTGT
TTTGTATAGCCTTTTGTAGTGAAAGATCCTGACAGAATATAAAAAGTCAC
AGAAGCCCTGAAATTGGCAATATAGATGTCAGTGTTAGCAGAACTAGCTT
CACTGATTTAGAAAAATAGAGGTGCACAATGCTCTGGCCACTCCTTGAAC
ATGTGTTTCTGCCAATGTTCTGACCAGGTGTGTGCCCATTGCTGCACCTT
CATTAGACTCTTTCCTTGTACCCCTCCCATACCCATTTCTTGAGAATAGA
CATTGTTTACATCTGGAAAGTCTCCCCTTTCTCCTTTCCCTCCTGAGGGC
CTATAAAAACTGGGAACTCTTTCCCCTCGAGGTCGACTCCTCTACTCCTA
TGAGGGAGATGAGTCATCCCCAGAGCTCTTGGGTTTCCCTGAATAAAGCC
TCCTGGTGTTTTGAAACAAGCTCTAACCTGCCTGAAGTCCTTGGGGGGCC
GGCTATTGTCCTGGAGCCCGAAGGGAAGGGGGCCCCCCCCCAAGTTTTCT
TTAAAAAGATCTGAAGGGGTTTTGGAATTCCCN

Query= MSMg01no388_p23.b1 MSMg01no388_p23.b1 CHROMAT_FILE:
MSMg01no388_p23.b1 PHD_FILE: MSMg01no388_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:27 2005
         (486 letters)



>mm_chr3_71158904_71159789
          Length = 886

 Score =  901 bits (466), Expect = 0.0
 Identities = 481/486 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaattatagatggtattctgtttgttcaactaacagtgttgaagaaacaatgaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaattatagatggtattctgtttgttcaactaacagtgttgaagaaacaatgaaattt 260

                                                                       
Query: 61  tcatagaatatttaaaaaacattccttataccaatggactggaaaaggtctccttttacc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatagaatatttaaaaaacattctttataccaatggactggaaaaggtctccttttacc 320

                                                                       
Query: 121 aactttttttctactcatgcattctttacagtatctttcacatctgtgaaaactggcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactttttttctactcatgcattctttacagtatctttcacatctgtgaaaactggcact 380

                                                                       
Query: 181 actacatgtctcacagtatgagttttgacaaacaatttttagtgagactttgcgatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacatgtctcacagtatgagttttgacaaacaatttttagtgagactttgcgatacaa 440

                                                                       
Query: 241 atatatacaaagttgtataggcagagattattttatgctatatagaaggttgtgctaaaa 300
           |||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 441 atatatacaaaggtgtataggcagagattcttttatgctatataaaaggttgtgctaaaa 500

                                                                       
Query: 301 tagtgatgaggtatatcttaaaattaccaattcaatagtctcttaatttttcaactgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtgatgaggtatatcttaaaattaccaattcaatagtctcttaatttttcaactgatt 560

                                                                       
Query: 361 aactatttaaaataatttgacaagaaagacatttgtcaaaatatgcatactgactctacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactatttaaaataatttgacaagaaagacatttgtcaaaatatgcatactgactctacc 620

                                                                       
Query: 421 tttggtgcacctgtatgttttgatatattggaacatttatgattattttctataatataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggtgcacctgtatgttttgatatattggaacatttatgattattttctataatataa 680

                 
Query: 481 ttttta 486
            |||||
Sbjct: 681 atttta 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)