BAC Information

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BAC

Clone NameMSMg01-389B21
Chromosome3 (Build37)
Map Location 92,060,618 - 92,061,025
singlet/doubletsinglet
Overlap geneLOC100043005
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543
Downstream geneLOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389B21.T7 (MSMg01no389_b21.b1)MSMg01-389B21.TJ (MSMg01no389_b21.g1)
ACCAG491449AG491450
length777748
length of high quality
(start - end)
435 (51 - 485)402 (86 - 487)
definitionCHROMAT_FILE: MSMg01no389_b21.b1 PHD_FILE: MSMg01no389_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:37 2005CHROMAT_FILE: MSMg01no389_b21.g1 PHD_FILE: MSMg01no389_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATATCTTTATCTGAAGGTAGCAGAAGGGGACAGTGTTCCACAA
TGGGCAGAGTTCGATGAGACCTCAAAGTCATCCTCTGCAGTGACACATAT
CCTCCAACAATACTACTCCAAGAAAGCCATACCTTCTAATAGTGCCACTC
CCTATGGGCCAAACGTTTTCACACATGAGTCTATAGGGTGTGTACCTACT
CAAATTACTATACCATTTATGCTCACTTTATAACTGAATACATTGAAGCT
GAGGAAAAATTAAGTGACTTGAGCAGTATATGAAATCTGCCTCAAAATTT
TATCTGTGCCAAGTAGTTCTGTTTCTCCACTGATCCCAAAGCGAGAACAT
TGAAAAATAAAAATAAAATAAAATAAAATCAAAGCTAGACTGATTAGTAA
AATTCTATGAAAGTAAACTAAACAGCTTTATTCAAGACCAACCACTAACA
CAAAACAATGACAATTTTCTCTTCACTGTGGTGAGGCTTGCACGAAACAG
ATGTGCATCCTTGTGAGCATGACATGCAATTGCCCAAAGAATACCCCTGA
CCTCTGTGAAAAGNTCCGGAAATCCCCAACTCTCGTACAAAACGGGGTCC
ACCAACTTGCGGGCCCCTGAAGCCTACACCCATTTTATTCGGAACACCGA
AAAGAAACACCCTCCCCGCCCGGGACACTATCGAACGTCAAACCTCTCCC
CCCCCACCACCAACCCCTCCTCCCTTN
NNNNNTTTTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGCCTAATAAACA
AAAACGAAAAAAGGACCCAGACTCCAAAGTGTTTTCCTTAAAAAAACAAT
AATAATGCTTGTCAGACATTAATACTTTTTCTTTTGGAAAATATTGGTTC
ATGTTTGTAGCTAATTTTTCGTTTGGGTTGTTTGATTTATTTATTATTTG
TTCAGTATTTATTTATTTAGGGTTTTTTTTTAGACAGAATTTGTGTATTT
TCTTTCTCGTACTGGATGTTCTTGAACTTGTTCTGTTGTAGAGGCTGGCC
TTAAACTTAGGGATCCACCTGTCTCTGCTCAAGTGATGGCATTAAAGGTT
TGTGCTATATCTATCGTTGCAGAAACTTGATGTGCCAGGGTGGAAGGAGA
CACAAGTGGCCTCTATTCTCTCAGAGGAAAGGGCTAAAGGGGACAGATTA
TCAGCGGTGAACTGCCACGAGCGGAGGCAGTAAAATGGATATAACGTGAA
TTAATATATTAATTAATAGAAAAAGTACCCATGCACTTGTTTCCCAAAAG
GCCAACATCGCGCACCCTCACCCCCACCACCAATACTGGCCCTCCCCTCC
CTCACTAAAATACAATTTTAAATCTTTTTCCGAAATTTCTCTAAAAAAAA
ACCCCGCGGTGAAAACCTCTCCTCTTACAACCCCCCTTGGCGTTCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_b21.g1 MSMg01no389_b21.g1 CHROMAT_FILE:
MSMg01no389_b21.g1 PHD_FILE: MSMg01no389_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:37 2005
         (402 letters)



>mm_chr3_92060418_92061218
          Length = 801

 Score =  665 bits (344), Expect = 0.0
 Identities = 391/410 (95%), Gaps = 10/410 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcctaataaacaaaaacgaaaaaaggacccagactccaaagtgttttccttaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggcctaataaacaaaaacgaaaaaaggacccagactccaaagtgttttccttaaaaaa 260

                                                                       
Query: 61  acaataataatgcttgtcagacattaatactttttcttttggaaaatattggttcatgtt 120
           | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 a-aataataatgcttgtcagacattaatactttttcctttggaaaatattggttcatgtt 319

                                                                       
Query: 121 tgtagctaatttttcgtttgggttgtttgatttatttattatttgttcag----tattta 176
           |||||||| ||||| |||||||||||||||||| ||||||||||||||||    ||||||
Sbjct: 320 tgtagctacttttttgtttgggttgtttgatttgtttattatttgttcagtatttattta 379

                                                                       
Query: 177 tttatttagggttttttttt---agacagaatttgtgtattttctttctcgtactggatg 233
           ||||||||||||||||||||   |||||||||||||||||||||||||| ||||| | ||
Sbjct: 380 tttatttagggtttttttttttgagacagaatttgtgtattttctttctagtactagctg 439

                                                                       
Query: 234 ttcttgaacttgttctgttg-tagaggctggccttaaacttagggatccacctgtctctg 292
           |||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||
Sbjct: 440 ttcttgaacttgttctgtagat-gaggctggacttaaacttagggatccacctgtctctg 498

                                                                       
Query: 293 ctcaagtgatggcattaaaggtttgtgctatatctatcgttgcagaaacttgatgtgcca 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcaagtgatggcattaaaggtttgtgctatatctatcgttgcagaaacttgatgtgcca 558

                                                             
Query: 353 gggtggaaggagacacaagtggcctctattctctcagaggaaagggctaa 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gggtggaaggagacacaagtggcctctattctctcagaggaaagggctaa 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space:   311256
Effective search space used:   311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)