BAC Information

Click to search

BAC

Clone NameMSMg01-389D04
Chromosome3 (Build37)
Map Location 94,862,081 - 95,036,044
singlet/doubletdoublet
Overlap genePip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1
Upstream geneLOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4
Downstream geneGm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389D04.T7 (MSMg01no389_d04.b1)MSMg01-389D04.TJ (MSMg01no389_d04.g1)
ACCAG491511AG491512
length755762
length of high quality
(start - end)		418 (79 - 496)399 (82 - 480)
definitionCHROMAT_FILE: MSMg01no389_d04.b1 PHD_FILE: MSMg01no389_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:43 2005CHROMAT_FILE: MSMg01no389_d04.g1 PHD_FILE: MSMg01no389_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(94,862,081 - 94,862,498)(95,035,646 - 95,036,044)
sequence
NNCCTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGGCCTGCCGCCCTCAGGCCTCCTCTGAGCTTTGGATGC
GCAGATCCTTCTCAGAAGACTGAGTCACAATCCACAAGCTGCTCTGATGC
TGCAGGGCTGAACAGCTGGAGCGGAAGCCACTGCTCTCGGCTGGAGTGCA
GGAGATTTAGTCCCCGCTAACACACAGTCTGGGAGGGAGGGAGCGAGGAG
GAGGCTGGAGCAGAGGCAACATGGAAAAGCTCTAACATGGCTGGGGGAGG
CTCAGCAGTCAGGCAGAAGTTCAAGGCTTCCACAACTAACTCCAGGACAA
CAAACAAGTTCAAAGAAAGGGCAACCAGGTGAGGGTGATCCCGTACATTA
TGTGCATGTATGAAAACGCAATGCAATTATGACTACTACACTAATAAAAG
CATTTAAAAATAGGTCTAAATGATTGCTAGAACTTTAATACATTAAAACC
AGATATTTATTACTTTTATATTGCATCTGTCATTTTTCAACAATACAAAG
TAGAGGCCAATAGTAACACTCCATACAAATGCTGAATCCCCTGTCCTTTC
CCTAAGTCCCAGCCCTCCCTCAAATACTCCCTCCCACCCCCTACAGAACC
CCGCTCTGAATAAAACACTTACATACCCCCTACCTAGTACCTCACGCCCC
ACACCCAGCCCGACCCTGCTTGCCCCCTTCTCGCTAACACCACCTGCCCC
CCTAC

NNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTTCAGGGTGGGGATG
GGGAGACTTACCGGCTGGGGCTTCTCGACCACGCAGCAGCCCAGTTTGTG
CCAAAACTCGCTCATGTTCCCTGATGGTTCCAGCTTCAGGCCGCTGCCAG
AGGCCCCAGGGGGCTCGTGTTTGTTGCTAACCAACCAGTCCTCACAGGCA
GGTGTAACAACACCCTGGGTTCAGTCAACCGGATGGGGTGGGAAAAGGTA
GAAATCCTAGACACCAACAAGTGGCCTTTCGGTGAAGGTCGGAGTCTCTG
ACTGGTGGGGCACTGGCAAGAGGCTTGGGCAGGCAGGCACAAGGTCCTGT
CTTCTTTAGATGTGGAATCCTGAATTTTAGCAGAAAGAAGATAAAATGTG
GGTGGGAAACAACCCTCTCTCCTCCCCAGAAACCTTCTGATAAGCCTCTA
TCTTCGGAGTCTCTCTTGGGAGACTACTGAGCTCCCTTACTGACCCCCCT
TCAAGATAGAGGTTCACTGTTGCTTCTCACATAAAGAATAGTGACCAAAT
AACACCTCATTGGCTTGAAAAACTATTGTTTACTGGTTACCTTTGTTAAT
GGGTTTCTATAAGGATTTTTCTGTTGAACATCTCTTATATAATCCTTACC
CCTTTACCCCATTTTTCAATTTTTCCATGGATGCTCCCTGAACTCCTTAT
TTTCCCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_d04.b1 MSMg01no389_d04.b1 CHROMAT_FILE:
MSMg01no389_d04.b1 PHD_FILE: MSMg01no389_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:43 2005
         (418 letters)



>mm_chr3_94861881_94862698
          Length = 818

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctcctctgagctttggatgcgcagatccttctcagaagactgagtcacaatccacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctcctctgagctttggatgcgcagatccttctcagaagactgagtcacaatccacaag 260

                                                                       
Query: 61  ctgctctgatgctgcagggctgaacagctggagcggaagccactgctctcggctggagtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ctgctctgatgctgcagggctgaacagctggagcggaagccactgctctcggctcgagtg 320

                                                                       
Query: 121 caggagatttagtccccgctaacacacagtctgggagggagggagcgaggaggaggctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagatttagtccccgctaacacacagtctgggagggagggagcgaggaggaggctgg 380

                                                                       
Query: 181 agcagaggcaacatggaaaagctctaacatggctgggggaggctcagcagtcaggcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagaggcaacatggaaaagctctaacatggctgggggaggctcagcagtcaggcagaa 440

                                                                       
Query: 241 gttcaaggcttccacaactaactccaggacaacaaacaagttcaaagaaagggcaaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcaaggcttccacaactaactccaggacaacaaacaagttcaaagaaagggcaaccag 500

                                                                       
Query: 301 gtgagggtgatcccgtacattatgtgcatgtatgaaaacgcaatgcaattatgactacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagggtgatcccgtacattatgtgcatgtatgaaaacgcaatgcaattatgactacta 560

                                                                     
Query: 361 cactaataaaagcatttaaaaataggtctaaatgattgctagaactttaatacattaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactaataaaagcatttaaaaataggtctaaatgattgctagaactttaatacattaa 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_d04.g1 MSMg01no389_d04.g1 CHROMAT_FILE:
MSMg01no389_d04.g1 PHD_FILE: MSMg01no389_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:43 2005
         (399 letters)



>mm_chr3_95035446_95036244
          Length = 799

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtttcagggtggggatggggagacttaccggctggggcttctcgaccacgcagcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctgtttcagggtggggatggggagacttaccggctggggcttctcgaccacgcagcagcc 540

                                                                       
Query: 61  cagtttgtgccaaaactcgctcatgttccctgatggttccagcttcaggccgctgccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cagtttgtgccaaaactcgctcatgttccctgatggttccagcttcaggccgctgccaga 480

                                                                       
Query: 121 ggccccagggggctcgtgtttgttgctaaccaaccagtcctcacaggcaggtgtaacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggccccagggggctcgtgtttgttgctaaccaaccagtcctcacaggcaggtgtaacaac 420

                                                                       
Query: 181 accctgggttcagtcaaccggatggggtgggaaaaggtagaaatcctagacaccaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 accctgggttcagtcaaccggatggggtgggaaaaggtagaaatcctagacaccaacaag 360

                                                                       
Query: 241 tggcctttcggtgaaggtcggagtctctgactggtggggcactggcaagaggcttgggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggcctttcggtgaaggtcggagtctctgactggtggggcactggcaagaggcttgggca 300

                                                                       
Query: 301 ggcaggcacaaggtcctgtcttctttagatgtggaatcctgaattttagcagaaagaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggcaggcacaaggtcctgtcttctttagatgtggaatcctgaattttagcagaaagaaga 240

                                                  
Query: 361 taaaatgtgggtgggaaacaaccctctctcctccccaga 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taaaatgtgggtgggaaacaaccctctctcctccccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |