Query= MSMg01no389_g20.b1 MSMg01no389_g20.b1 CHROMAT_FILE:
MSMg01no389_g20.b1 PHD_FILE: MSMg01no389_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:01 2005
(405 letters)
>mm_chr3_39884493_39885296
Length = 804
Score = 727 bits (376), Expect = 0.0
Identities = 394/400 (98%), Gaps = 1/400 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcattctctgagtgttctatgcataccattactcagagacagtatttatgttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcattctctgagtgttctatgcataccattactcagagacagtatttatgttt 264
Query: 65 ctcctggagtttttcataatctacatcttaaatccacctatcttgtttttaaagaaaatc 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ctcctggagtttttcataatctacatcttaaatccacctattttgtttttaaagaaaatc 324
Query: 125 agattctggctctctgctatcgtagcctccttttttttccagtttaatatggacagagga 184
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 325 agattctggctctctgctatcatagcctcc-tttttttccagtttaatatggacaaagga 383
Query: 185 agggtttcttcaatggcatgctgtgtagacatagtagcacagttttgtttgtgttatcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggtttcttcaatggcatgctgtgtagacatagtagcacagttttgtttgtgttatcct 443
Query: 245 cacatacattttaaaatttttcctaagacttatttattttatgtgtgtaaatcttttatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 cacatacattttaaaatttttcctaagacttatttattttatgtgtgtaaatcttttgtc 503
Query: 305 tgtatgcatttctatgtaccacatgtgtgcctggtgcttgagcggtcagaagagagtatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 tgtatgcatttctatgtaccacatgtgtgcctggtgcttgagcggtcagaagagaatatg 563
Query: 365 agatatcttataccaagatttatagatggttgtgaatcat 404
||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatatcttataccaagatttatagatggttgtgaatcat 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space: 314820
Effective search space used: 314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_g20.g1 MSMg01no389_g20.g1 CHROMAT_FILE:
MSMg01no389_g20.g1 PHD_FILE: MSMg01no389_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:01 2005
(492 letters)
>mm_chr3_40059266_40060157
Length = 892
Score = 729 bits (377), Expect = 0.0
Identities = 454/505 (89%), Gaps = 42/505 (8%)
Strand = Plus / Minus
Query: 1 catgagattaatgctttttgatacccattttggataatgctacatttaaacagtacaaga 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catgagattaatgctttatgatacccattttggataatgctacatttaaacagtacaaga 438
Query: 61 aaaggcaaaggaaactggcagcccctcctcccaacctgaggtccttggcaagagccggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaggcaaaggaaactggcagcccctcctcccaacctgaggtccttggcaagagccggat 378
Query: 121 gggatgtctctcacccactaactccatcgcaaatgaagcagatgttctgtctttgccccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggatgtctctcacccactaactccatcgcaaatgaagcagatgttctgtctttgccccc 318
Query: 181 aaaactcttattccgaaacaaaaagattagtgaggattgaaaaatgagtgtgaggagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaactcttattccgaaacaaaaagattagtgaggattgaaaaatgagtgtgaggagaca 258
Query: 241 gtggaaaccctttattaaataagcgttggttgtatttaattttcaaatttttactggagc 300
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 257 gtggaaaccctttattaaataagcgctggttgcatttaattttcaaatttttactggagc 198
Query: 301 cagggcgtggtggcccatatctttaatcccagtatttgggaggcagaagcacgtgaactt 360
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cagggggtggtggcccacacctttaatcccagtatttgggaggcagaagcacgtgaactt 138
Query: 361 cttagttcaaggccatcctggtct-------------------ta--------aaccctt 393
||||||||||||||| |||||||| || |||||||
Sbjct: 137 cttagttcaaggccagcctggtctacagagagtgttccagggctatgtagggaaaccctt 78
Query: 394 gcttaaaaaacaaaattaactaactaactaactaactaagtagctaaaaaaaaaaaaaaa 453
||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 77 ccttgaaaaacaaaattaactaactaactaa--------gtagctaaaaaaaaaaaaaaa 26
Query: 454 aa-------gtaaatgggcttccaa 471
|| ||||||||||||||||
Sbjct: 25 aaaaaaaaagtaaatgggcttccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
