Query= MSMg01no389_g22.b1 MSMg01no389_g22.b1 CHROMAT_FILE:
MSMg01no389_g22.b1 PHD_FILE: MSMg01no389_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:02 2005
(398 letters)
>mm_chr3_29246542_29247339
Length = 798
Score = 667 bits (345), Expect = 0.0
Identities = 378/389 (97%), Gaps = 4/389 (1%)
Strand = Plus / Minus
Query: 8 ttctatgctttccacttatggaactt-aaaaaaatgaaaaaattaatcaaagcataactg 66
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 594 ttctatgctttccacttatggaacttaaaaaaaatgaaaaaattaatcaaagcataactg 535
Query: 67 atttggatgaaaaagcatcaaaatttaaatagaattagactattcttaaataatgaagtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atttggatgaaaaagcatcaaaatttaaatagaattagactattcttaaataatgaagtt 475
Query: 127 cataatttcccctataatagtattccccggaactagccattagtctctacttctctctta 186
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cataatttcccctataatagtgttccccggaactagccattagtctctacttctctctta 415
Query: 187 ataaaccacatggctaaaggaggctacagtgtgacagctctcaa-tgtcaaagccttcct 245
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 414 ataaaccacatggctaaaggaggctacagtgtgacaactctcaact-tcaaagccttcct 356
Query: 246 tctccctgggcatggatgaactctctgtggtcctgacacgtggcaggcaggggtaggaca 305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 tctccctgggcatggatgaactctctgtggtcctgacacatggcaggcaggggtaggaca 296
Query: 306 atctagggttcaaagtcgccctgttatacacggtggcagcctatgtcagaaagaaaggag 365
| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||
Sbjct: 295 acctagggttcaaagtcaccctgttatacacggtggtagccgatgtcagaaagaaag-ag 237
Query: 366 aggagcaggaggaagggagaaagaaatga 394
|||||||||||||||||||||||||||||
Sbjct: 236 aggagcaggaggaagggagaaagaaatga 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_g22.g1 MSMg01no389_g22.g1 CHROMAT_FILE:
MSMg01no389_g22.g1 PHD_FILE: MSMg01no389_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:02 2005
(420 letters)
>mm_chr3_29070454_29071273
Length = 820
Score = 804 bits (416), Expect = 0.0
Identities = 419/420 (99%)
Strand = Plus / Plus
Query: 1 aagaataaccacttgaaaaggaattctcccttaatgtctttggtgcaaaaaatgtgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaataaccacttgaaaaggaattctcccttaatgtctttggtgcaaaaaatgtgctca 260
Query: 61 gattgtcctggctctgaacagtaagactcaaagaagtaaattgctttctagctactagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattgtcctggctctgaacagtaagactcaaagaagtaaattgctttctagctactagct 320
Query: 121 ttcaattgctagtggctgaaagcgctggctaaccccaaacctcacaaaagtggggcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaattgctagtggctgaaagcgctggctaaccccaaacctcacaaaagtggggcagag 380
Query: 181 tagagagtagtttgcatttgccttctaatcaaaatgaaagatagaggctgagtgagatac 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tagagagtagtttgcatttgccttctaatcaaaatgaaagatagaggcggagtgagatac 440
Query: 241 tattgttacagtgttatttctgatggcaggagtttataaataggttaaaaatccaaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgttacagtgttatttctgatggcaggagtttataaataggttaaaaatccaaacaa 500
Query: 301 aacatacgctactacaagcctcaacaagagccacttaaatgccctgtatacatttttcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatacgctactacaagcctcaacaagagccacttaaatgccctgtatacatttttcag 560
Query: 361 gcaatttttatttgtaataagggtctagaaaatggttttgaggtgtgaaaaactgatgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatttttatttgtaataagggtctagaaaatggttttgaggtgtgaaaaactgatgtt 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
