BAC Information

Click to search

BAC

Clone NameMSMg01-389J02
Chromosome3 (Build37)
Map Location 51,591,818 - 51,592,147
singlet/doubletsinglet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J02.T7 (MSMg01no389_j02.b1)MSMg01-389J02.TJ (MSMg01no389_j02.g1)
ACCAG491791AG491792
length7341,318
length of high quality
(start - end)
404 (79 - 482)---
definitionCHROMAT_FILE: MSMg01no389_j02.b1 PHD_FILE: MSMg01no389_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:13 2005CHROMAT_FILE: MSMg01no389_j02.g1 PHD_FILE: MSMg01no389_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
CACCGCGGAATTCTGAAGCTTTCGCATTTGAGTCCCAACCTGATATTGCT
TGCTATTTATAGTCTTCAGCTGACAACTTAATTCCTATTTTTAAGATTTT
TTTTGGTTTTATGATTATGTCTGCCTGAATGTATTTATATGCATCACATA
TGTGCAGGTGCCCACAGAAACCAGAAGAGGGCACTAGATTCCCCTGGAAG
TAGATATACAATGATTGTGAGCCGCCCAGTGTGGGTGCTGGGAACCCAAA
CTGGGAATTCTCCAAAAGAAACACTCCTAACTGCTGAGCCATCTCTACAG
CCCAAACATGTCATTTCTCCATGTCTTACTTTTCTGTTTTGTGAAATGGA
GTTTGACCTCTCAAACATACGTTATATATCTTATACAATTGTTCTGAGGA
TTAAAAAAAATCTAACGAAAAAGCTTTAAAAATCTAGATTTCGTGAGCAC
TTTACAACAAGGGCCAGCACATAACAATCTGTCCAAAAACAAACTAAAAA
GCTGCCTATTTTCATGCCTCCCGCCCTATCCACCCGACTTACGAACAGTA
ATTCATCCTTAAAAGACCTTTCACGGCCCCCCGTGCTAGTCTTAGTCCCC
TAAGTGCCCCCTCCCGGTGACCCACTTTGCCGCTCCCTATTCCCCCTCCC
ACCCCCTCCGTCCATCCGCCCCCGCCTCCCATCG
AGAAGAGAGTAAGTGATTTTCTTGTTNNTTNGNCNCGGTAGGATATCGGC
TCAAGACTTACCCTAGATGGCAGTACGGGCGCGGGGTGTACGCGAAGGCG
TATCCGCGGCGACACGTGCCCNCGTATTTAACCGTGAAATACGGAATAGT
GGATACATAAATAGTAGTATCGCGCGGATCGCGGCGGTGTTANGTGTGCG
CGACCCTAGTCTTATCTCCTGACAGCAGCCTCCGCATACGACATAACATA
AGAGAGATGTTGTTTTCTTTATTTAGTATTGTGCGATGTCAACGGGAGGC
GCACGGGAGGCGTTATTTTCCTATATACCAATGAGCGCAAGAGATCCAGC
ATTTAATTCTCTTCACGTCTTTTGTGCGGACACCGTGCGTATTTATGGTG
AGTGTTGATATTCAGGATTCCGTTCGAGCCTGTGGTAGGACGAGTCGGTA
CAAGCCGCGCGTTGCTGCGTAGTCCCGTGGACCATAGGAGCACGCGCCCA
CACGAGCGCCATCTTCTACTCACCCTACCATCATACATGGATCACAACGA
CGCTAAGCGCATACATATAACTCATTATACCCGCCATACTACTATTCACA
ACAAATCAATCCGACCACTACGGTCACGAGAGTTACCCCGATTCGCCCTC
TGTGTGACCGCACACATATCAGTGATCTCACACCCGCAAACCCTACCCAT
ATCTACACCTCATCCACTCCTACAGCATTACTCATATAACGAATCCATAG
CGAGAGATGGATATCCAGTTACGATGCGTAGCCATATTACAGAACACTAT
ATCAGACGAATGTCGACAATACAACAGCTAATAAGTTATAAAACACGACA
TTAGACGGCGCGACATAAGTACTGAGTAACCTCGATTACATACATACATA
CTGCGCATGCACGTGATTCGATATACGGTAGGTGTGCGCGACGGCGCGTG
CATCCAGTTGCACTATCACGGCATATCCTACCCTATTACGTCACTACATA
TATCTCGCGCATCTATTTACACGCTCTTGCAGAGCGTCAAGATGTACCGT
GGCATAACGTGCANCAACGACAGTGTCCATAATGCGATCATACTCTGAAC
CATATGTTCTATCTAGCTGTCACACTTGACTCGTTCGATACGACACACGT
AGCATACTCGTGACATCTCAGAATCACACGATATATAGACTTCCGTGTGC
TCGTACTACCGACTATCACTCTGTCCACATAGTACATNCGCACGTTGAGA
CANGNAGCNNNNCCCCNCNNCCCGCGCGGTCCGATGGACAATATAACTAC
TCCACTATAGAACGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j02.b1 MSMg01no389_j02.b1 CHROMAT_FILE:
MSMg01no389_j02.b1 PHD_FILE: MSMg01no389_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:13 2005
         (404 letters)



>mm_chr3_51591343_51592147
          Length = 805

 Score =  615 bits (318), Expect = e-180
 Identities = 327/330 (99%), Gaps = 1/330 (0%)
 Strand = Plus / Minus

                                                                       
Query: 76  tggttttatgattatgtctgcctgaatgtatttatatgcatcacatatgtgcaggtgccc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggttttatgattatgtctgcctgaatgtatttatatgcatcacatatgtgcaggtgccc 746

                                                                       
Query: 136 acagaaaccagaagagggcactagattcccctggaagtagatatacaatgattgtgagcc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagaaaccagaagagggcactagattcccctggaagtagatatacaatgattgtgagcc 686

                                                                       
Query: 196 gcccagtgtgggtgctgggaacccaaactgggaattctccaaaagaaacactcctaactg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcccagtgtgggtgctgggaacccaaactgggaattctccaaaagaaacactcctaactg 626

                                                                       
Query: 256 ctgagccatctctacagcccaaacatgtcatttctccatgtcttacttttctgttttgtg 315
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgagccatctctacagtccaaacatgtcatttctccatgtcttacttttctgttttgtg 566

                                                                       
Query: 316 aaatggagtttgacctctcaaacatacgttatatatcttatacaattgttctgaggatta 375
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 aaatggagtttgacctctcaaacatacgttatatatcttatagaattgttctgaggatta 506

                                         
Query: 376 aaaaaaa-tctaacgaaaaagctttaaaaa 404
           ||||||| ||||||||||||||||||||||
Sbjct: 505 aaaaaaaatctaacgaaaaagctttaaaaa 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 805
Length adjustment: 9
Effective length of query: 395
Effective length of database: 796
Effective search space:   314420
Effective search space used:   314420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)