BAC Information

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BAC

Clone NameMSMg01-389O09
Chromosome3 (Build37)
Map Location 152,289,589 - 152,441,594
singlet/doubletdoublet
Overlap geneAk5, LOC100040705, Pigk
Upstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
Downstream geneRpl29-ps1, St6galnac5, LOC100040750, St6galnac3, EG545578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389O09.T7 (MSMg01no389_o09.b1)MSMg01-389O09.TJ (MSMg01no389_o09.g1)
ACCAG492043AG492044
length746740
length of high quality
(start - end)
111 (107 - 217)288 (334 - 621)
definitionCHROMAT_FILE: MSMg01no389_o09.b1 PHD_FILE: MSMg01no389_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:38 2005CHROMAT_FILE: MSMg01no389_o09.g1 PHD_FILE: MSMg01no389_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,289,589 - 152,289,699)(152,441,307 - 152,441,594)
sequence
NCCCTTATAATTTGCGGNNGNTATANGAANTACTAATACCAGAGGATCCG
CGGAATTATCATTTTTCTCCTGACTGAGGAAAGACGGTGTCAGCTCTGCT
CACTAACACCAATTCTCTTTGCTTCAACAAACTCTTCCCTTTTTACTGAT
GAGAGAACTACTTTAAATTCATCTCTACAGGCTGAGGCTGTCTGGGCATG
GTGGCACATACTGGCAAACTCAGTACCCTGGGGCATAAGATTGGGCTGAA
GCTGAAGGAGTGTGAGTTCGAGGTCATCCTCTGCCTCTCACATTAAAACA
AACATTAAAAACAACAACTATTTTCAGTCAGTTTGACGACAGACAATGTT
CCTCCAGGTCTTCTTATGCACCTTGCGCGTGAGAATCAATGACCCACACT
CCCTCATTTTTTTCTACCCTGTCTACTCTGCAAGCCTTTCTAACTCTTAC
CATCTCTTACAATAATATGTGACATCACGATTCCTCTCCCCATGCTCTCT
CTCACCCCTTACACAAACATCTCTCTGCACCATCTAAGACCAAGCTTCTT
TCTCTCGTCATCCTCCCTATCTGACCCCTCCCTGTGTCCAATGCCTGCAC
CCCCCCTCATCTTTCGCTCACGTTGCACCTCGACCCACCCCCCGTTCACT
TCCCTCCTCCCTCCTTCATTGTACCCTACCATCCCCCTGTCTTCTCTACC
GACCCTCTCCCTTTCACTCCTACTGCACTCCCACCTCCCCCCTTTT
NNCCCCCGATGATAGTGNTAGGCCTGGNGGNCGCCTGGTTCTCAACACTT
AGGTGAACTATAGAATGTCCCGCGAAATTCCCACCATGGAGAACTATGCT
GTGAGCAAGGAAGATGGCCCAGGGTCTCAGGAACATCACTGGCTGCTGTC
CTGACTGAAGCTTCTGAGACCTGACTCAGTTGGGCCAGGGCCAGACTCCA
GGAAAATGTGAAATAATGATGACTTTAAATTACTGTTTGCTACAAAGTAA
TACAAAACTAATGAACACATTTGGAGAAAAATGTATTGATAGGAAATAAA
ATTTGATATTTGTTGTCTGAGGCTTTTTTTTCATAGTGATTACCATTTGT
TTTAAAATAAATCCATAAAAACAAGATAAAATACTCCACTGTGACTCACT
GTATTTTCCATACCTATGTTTTCTACAAGGCCTTGCTCAAACACCGTATC
CAAGTATCTAAGTCAGGGTTCTATGCGAAGAGACACCATTTCCTCTTATA
AGGGAACGCATTTAATTGGGGCTGGCTTACAGGTTCAGAGAGTCAGGCCA
TCATCCTCATGGTGGGGAGCATGGTGGCACACAGGCAGACATGGCAGCCG
AGAGTTCTCCATCCAGAGACCCAAAGACTCACTTCCCTCAGCAAGCTCAT
ACCTACTCCAAAGTCACACCTCCCAGTTTCCTCCCAAATAGTGCCGACTC
CTCGAGAACAAGCATTCAAGTATGTGAGCCTGTGGTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_o09.b1 MSMg01no389_o09.b1 CHROMAT_FILE:
MSMg01no389_o09.b1 PHD_FILE: MSMg01no389_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:38 2005
         (111 letters)



>mm_chr3_152289389_152289899
          Length = 511

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccaattctctttgcttcaacaaactcttccctttttactgatgagagaactactttaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccaattctctttgcttcgacaaactcttccctttttactgatgagagaactactttaa 260

                                                              
Query: 61  attcatctctacaggctgaggctgtctgggcatggtggcacatactggcaa 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcatctctacaggctgaggctgtctgggcatggtggcacatactggcaa 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no389_o09.g1 MSMg01no389_o09.g1 CHROMAT_FILE:
MSMg01no389_o09.g1 PHD_FILE: MSMg01no389_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:38 2005
         (288 letters)



>mm_chr3_152441274_152441961
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgattaccatttgttttaaaataaatccataaaaacaagataaaatactccactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgattaccatttgttttaaaataaatccataaaaacaagataaaatactccactgtg 262

                                                                       
Query: 61  actcactgtattttccatacctatgttttctacaaggccttgctcaaacaccgtatccaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcactgtattatccatacctatgttttctacaaggccttgctcaaacaccgtatccaa 202

                                                                       
Query: 121 gtatctaagtcagggttctatgcgaagagacaccatttcctcttataagggaacgcattt 180
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gtatctaagtcagggttctatgtgaagagacaccatttcctcttataaaggaacgcattt 142

                                                                       
Query: 181 aattggggctggcttacaggttcagagagtcaggccatcatcctcatggtggggagcatg 240
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 141 aattggggctggcttacaggttcagagggtcagcccatcatcctcatggtggggagcgtg 82

                                                           
Query: 241 gtggcacacaggcagacatggcagccgagagttctccatccagagacc 288
           |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 81  gtggcacacaggcagacatggcagccgagacttctccatccagagacc 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)