NNNNAACTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATCAGACTTTCCAAGAAGACCTAATTCCAGTTCTCCTAA
AACTATTCCACAAAATAGAAACAGAAGGTACTTTACCCAATTAATTCTAT
GAAGCAATGATTACTCTGATACCTAAACCACATAAAGACCCAACAAAGAT
AGAGACCTTCAGACCAATTTCTCTTATGAATACTGATGCAAAAATATTCA
ATAAAATTCTCACAAACTGAGTCCAAGTACACATCCAAACAATCATCCAT
CATGATCAAGTAGGCTTCATTCCAGGGAAGTTTGGATGGTTTAATATATG
GAAATCCATAAATATAATCCACTTTAGAAACAAACTCAAAGACAAAAACC
ACATAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGATA
AAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATACTAAAA
GCAATTTACAACAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCT
GGAAGCAATCCCACTAAAATCAGTCCCACTAGACTGTGGACTCCTGACTC
ACAAGGAGGATGCCACAACAGGATTCTTTTGCACACGTTTATTGGAAGAG
CTTGATAGCGAAGGCAAAAGACCCCTAGCCCCAAAACTGGCGCTGCTTAT
ATGCACTCAGCCCCCATCCACTCACGGNA

NNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCAAGTCTTGTTCCTCACA
TTCTTTTTTTTTTTTAAAGGATATTTTCTTTATTTACATTTTAAATGTTA
TCCCCTTTCCTAGTTTACCCTCTGAGAATCCCCTATCTCCCCCCCTCTCC
CCAACACACCCCCTCCTCCTTCCTGGTCCTGGCATTCCCCTATACTGGGA
CATAGAACCTTCACAGGACCAAGGGCCTTTCCTTCCATTGATGACTGACT
AGGCCATCCTCTGCTATCTATACAGCTAGAGCCATGAATCCCTCACATTC
TTAAAAATCTGAAATCAGATCATTAGAGATAGAAGTGGAAAAAACTGAAG
CTCTCAAGGTGTGCTTCTTCCTTATTTCAGTTTATCCAGCTTATTCCAGC
TAGGCACCACACAGCAAAGATTCCCGAACCTCCTAAAACACTGCCACCAG
CTTAATCATGTGAGCCTGTGCAGATGTGCATGCGTGTGCATGTGCGTGTG
CGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNN
NNANTNNTTTTTTNTTTTTTTTTTTTTTTTTNNTTTTTTTGTTNNTGTTT
TNTTTNTTTTNTTTTTTTTTTTGGTTTTTTTTTTTTTTNGTTGTGTTTTG
TTTTTTTTGGGTTTTTTTTCTGGTTTTCCCCCTNTNCCG

Query= MSMg01no390_a04.g1 MSMg01no390_a04.g1 CHROMAT_FILE:
MSMg01no390_a04.g1 PHD_FILE: MSMg01no390_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:47 2005
         (516 letters)



>mm_chr3_150859172_150860087
          Length = 916

 Score =  828 bits (428), Expect = 0.0
 Identities = 497/528 (94%), Gaps = 17/528 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcaagtcttgttcctcacattcttttttttttttaaaggatattttctttatttacattt 63
           |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 916 gcaagtcttgttcctcacattctttttttttttttaa-gataatttctttatttacattt 858

                                                                       
Query: 64  taaatgttatcccctttcctagtttaccctctgagaatcccctat--------ctccccc 115
           |||||||||||||||||||||||||||||||||||||||||||||        | |||||
Sbjct: 857 taaatgttatcccctttcctagtttaccctctgagaatcccctattgcccccccaccccc 798

                                                                       
Query: 116 c--ctctccccaacacaccccctcctccttcctggtcctggcattcccctatactgggac 173
           |  | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 797 ccacgctccccaacacaccccctcctgcttcctggtcctggcattcctctatactgggac 738

                                                                       
Query: 174 atagaaccttcacaggaccaagggcctttccttccattgatgactgactaggccatcctc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atagaaccttcacaggaccaagggcctttccttccattgatgactgactaggccatcctc 678

                                                                       
Query: 234 tgctatctatacagctagagccatgaatccctcacattcttaaaaatctgaaatcagatc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgctatctatacagctagagccatgaatccctcacattcttaaaaatctgaaatcagatc 618

                                                                       
Query: 294 attagagatagaagtggaaaaaactgaagctctcaaggtgtgcttcttccttatttcagt 353
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attagaggtagaagtgggaaaaactgaagctctcaaggtgtgcttcttccttatttcagt 558

                                                                       
Query: 354 ttatccagcttattccagctaggcaccacacagcaaagattcccgaacctcctaaaacac 413
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 557 ttatccagcttattccagataggcaccacacagcaaagattcccaaacctcctaaaacat 498

                                                                       
Query: 414 tgccaccagcttaatcatgtgagcctgtgcagatgtgcatgcgtgtgcatgtgcgtgt-- 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  
Sbjct: 497 tgccaccagcttaatcatgtgagcctgtgcagatgtgcatgcgtgtgcatgtgtgtgtat 438

                                                           
Query: 472 --gcgtgtgcgtgtgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 515
             | |||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 437 gtgtgtgtgcgtgtgtgcatgtgtgtgtgtgtgtatgtgtgtgtgtgt 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)