BAC Information

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BAC

Clone NameMSMg01-390A18
Chromosome3 (Build37)
Map Location 61,105,566 - 61,106,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390A18.T7 (MSMg01no390_a18.b1)MSMg01-390A18.TJ (MSMg01no390_a18.g1)
ACCAG492155AG492156
length727736
length of high quality
(start - end)		515 (61 - 575)565 (85 - 649)
definitionCHROMAT_FILE: MSMg01no390_a18.b1 PHD_FILE: MSMg01no390_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:50 2005CHROMAT_FILE: MSMg01no390_a18.g1 PHD_FILE: MSMg01no390_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAACACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATATAGTCTTCCAAAGATAAGCTTGGTACGGACTGAT
AGTCTCAGAAAATAATCTTAAATAAGTGAATGGAATGAAAAATCCACTTG
AAATCATCAGCTGATCCCAACAGTATACGGTTCTTCAACATTTTAAATTT
ATTTTTTCTTGAATTAATGTTGGATAATTTTGTTCATGTACTTTTCCAGT
TGAACTCAGATTACTCTCAAAGAGAGCTGCTCTTTAGGGAACTAATCCTT
TACTGTTAAATATTTTATTAATTTGAAGACATGTGATCCCTTTTAATATG
ACAAGTACCTCTATGCAGAAAGCTATACTATTTTTATTTATGCAATTAAT
CATTAGATTACAGCTTTTATTCTTCTATGTATGTTGTCATCTTTAAATTT
CACACATTTTAGTTAAACTTTCAATAAGTTAAAATATTTAACCACACTTT
TTTTTTTAATTTTACTTTCTGATTAACATACAAGATATCAGTTAGCATTA
TAGCAGTTTGGAACAAAGTGTTCTTCAGTAGGTTCTCCTTTTTTTCTCAC
CTCCTCCAATCTCATGCTATAATTTTCTTTCCCTCCCCACTCTCTTTTCT
TATTTTCTATCTCATCTGTTCTTTTGCAACCCCCTTNCCCACAGNNNGTT
GTTGNTTGGTTGGTTGGTTTCTCTCCC

NNNNCCCCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAAT
GTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAGCCA
CTCTGGAAATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTANAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTC
ACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGAT
ANCATTTCCTAAACCCTGTAACTCAAGAAAAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_a18.b1 MSMg01no390_a18.b1 CHROMAT_FILE:
MSMg01no390_a18.b1 PHD_FILE: MSMg01no390_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:50 2005
         (515 letters)



>mm_chr3_61105366_61106280
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatatagtcttccaaagataagcttggtacggactgatagtctcagaaaataatctta 60
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 715 ttcatatagtcttccacagataagcttggtacagactgatagtctcagaaaataatctta 656

                                                                       
Query: 61  aataagtgaatggaatgaaaaatccacttgaaatcatcagctgatcccaacagtatacgg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 655 aataagtgaatggaatgaaaaatccacttgagatcatcagctgatcccaacagtatacgg 596

                                                                       
Query: 121 ttcttcaacattttaaatttattttttcttgaattaatgttggataattttgttcatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttcttcaacattttaaatttattttttcttgaattaatgttggataattttgttcatgta 536

                                                                       
Query: 181 cttttccagttgaactcagattactctcaaagagagctgctctttagggaactaatcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cttttccagttgaactcagattactctcaaagagagctgctctttagggaactaatcctt 476

                                                                       
Query: 241 tactgttaaatattttattaatttgaagacatgtgatcccttttaatatgacaagtacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 475 tactgttaaatattttattaatttgaagacatgtgatcccttttaatatgacaagtatct 416

                                                                       
Query: 301 ctatgcagaaagctatactatttttatttatgcaattaatcattagattacagcttttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctatgcagaaagctatactatttttatttatgcaattaatcattagattacagcttttat 356

                                                                       
Query: 361 tcttctatgtatgttgtcatctttaaatttcacacattttagttaaactttcaataagtt 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 355 tcttctatgtatgttgtcatctttaaatttcacatattttagttaaactttcaataagtt 296

                                                                       
Query: 421 aaaatatttaaccacacttttttttttaattttactttctgattaacatacaagatatca 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 aaaatatttaaccacactttttttttaaattttactttctgattaacatacaagatatca 236

                                              
Query: 481 gttagcattatagcagtttggaacaaagtgttctt 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gttagcattatagcagtttggaacaaagtgttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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