NNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATAAAAGTAAGTTTAAAAAAGGATATAAATTTGAGGGGTT
GGGGGCAAAGGAGTTGGAGTGGACTGTAAGAGAGGTGGAAAGGATAGGAA
AGGATATAAGTATGATACTCATTTATGAAATTATCAAAAAAAGAATGATA
GGAGATTTTAGCCTGAACTCTTTTATGTAGTGACAATACAATCATGGATG
GCATAATGTTTCATTACCATAATTCATTCATCTGTGCTTTCTTCATGTCT
GCCTTCCTCCTCTCCCCTCCCCTCCCTTCCAACCCCCTCTCTTTTCCTCA
CACTCTTACTTCCATTTCCCTACTTTCCTTTTGATCTTTCTCTATTGGCA
AGCCACATCACATGTGTGGAGGTTAGAGGTCAGCTTGCATGAGCAAGTTA
GTTCTCCTCTTGCTCCATATGAGCCTTTGGGATTCCAAATCATCATCTGG
TTTGGTGACAAACTCTTTGACCAGCTGAGCCATATCACTGGCATGTATTA
TCTTAATTTCCTGGCAGAGTTAGGTGAATACTGGGCTTTTTTGTGTTCCT
GAGAAGTCTGGTGCTGATGGTGCCGCCGTTGGCGTGGTCGCCGTCCTCTC
CTTCCTCCCCCCCTCCCTCCCCTGTTTTTTTTCCCTCCCTCCCCTCCTCT
CTCTCCCCCTTCTTCCCCCCCCTCCCTTTTCCCCCTCCCTCCTTCCTCTC
TCTCCC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGATAAGTTATGCCA
AACTCTCCCAAGAACAGCACAGGGAAGAGAAGCTACTTAAGAGTAGTTCA
AGGGGGAGAGAGGGGGGGGATATGAATCACTGAATTTGGAGTTAGTGGTC
AGTGCAGTGCAGTACAGTGCAGTTGAGTTCATGCAGTTTAGTGTAGGTCA
GCAGAAACAGTTGAAACCAGATACTAAGAAGGAACAGAAGATTAGAATAA
ATTTCCAGAGGTAGTTTGAGGCCAAATGGTGTTACTCAGTGAAAAATCAA
GAAAAAACAAACTGAATCAGTCAGCTTGAAGAGAAGTTTGACTTTGGTCA
AACAGCTCAGTTGAACCAGTCAGCCAAAGTTCAGAAAGAACTAGAAAGTG
AGAGCTTAGTACTGCATCTTAGAGGCTGAAATATCTTAGGCCTAGATTAG
ATTGTAAGAAGACTAGAATCATTCTGGCCTAGGCTTAGGGATAGAAAAGA
GGTAGAAAGCTTCTGGGTTTAGCCAAAGACTGTTTTTAACAAAGTTTGGC
CAAAGCTTTCCTCCCATCCCCTCCCGCTGAAGATAAAATCATTCGTTTTC
TTCTTTTTACTCCTGGGGAACATCGGCCTCTTGGTAAATACTTCTTTGTG
GGAGAACTTTTTCCCCCTCCTCCTTTTCTCTCTCTCTGTCATCACGGGCT
TTTCACACTCGCCTTGTTGTATCCTG

Query= MSMg01no390_f07.b1 MSMg01no390_f07.b1 CHROMAT_FILE:
MSMg01no390_f07.b1 PHD_FILE: MSMg01no390_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:13 2005
         (464 letters)



>mm_chr3_11990877_11991740
          Length = 864

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   aaaaaaggatataaatttgaggggttgggggcaaaggagttggagtggactgtaagagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaaaaggatataaatttgaggggttgggggcaaaggagttggagtggactgtaagagag 372

                                                                       
Query: 65  gtggaaaggataggaaaggatataagtatgatactcatttatgaaattatcaaaaaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtggaaaggataggaaaggatataagtatgatactcatttatgaaattatcaaaaaaaga 312

                                                                       
Query: 125 atgataggagattttagcctgaactcttttatgtagtgacaatacaatcatggatggcat 184
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgatagtagattttagcctaaactcttttatgtagtgacaatacaatcatggatggcat 252

                                                                       
Query: 185 aatgtttcattaccataattcattcatctgtgctttcttcatgtctgccttcctcctctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 251 aatgtttcattaccataattcattcatctgtgctttcttcatgtctgtcttcctcctctc 192

                                                                       
Query: 245 ccctcccctcccttccaaccccctctcttttcctcacactcttacttccatttccctact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccctcccctcccttccaaccccctctcttttcctcacactcttacttccatttccctact 132

                                                                       
Query: 305 ttccttttgatctttctctattggcaagccacatcacatgtgtggaggttagaggtcagc 364
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 131 ttccttttgatctttctatattggcaagccacagcacatgtgtggaggttagaggtcagc 72

                                                                       
Query: 365 ttgcatgagcaagttagttctcctcttgctccatatgagcctttgggattccaaatcatc 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 71  ttgcatgagcaagttagttctcctcttgctccatgtgagcctttgggattccaaatcatc 12

                      
Query: 425 atctggtttgg 435
           |||||||||||
Sbjct: 11  atctggtttgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)