Query= MSMg01no390_g09.b1 MSMg01no390_g09.b1 CHROMAT_FILE:
MSMg01no390_g09.b1 PHD_FILE: MSMg01no390_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:18 2005
(237 letters)
>mm_chr3_67781338_67781971
Length = 634
Score = 381 bits (197), Expect = e-110
Identities = 229/245 (93%), Gaps = 11/245 (4%)
Strand = Plus / Minus
Query: 1 ataatactcatacaatgaaaatgttatgtaaatggacattatgctgtattggttaaacaa 60
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 352 ataatactcatacaatg-aaatgttatgtaaatggacattatgctgcattggttaagcaa 294
Query: 61 tgatggcaagacaaatattttgcatatattcagtatatttgcagtttaaaaaaatacttt 120
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 293 tgatggcaagacaaatattttgtatatattcagtatatttgcagttt--aaaaatacttt 236
Query: 121 cttctctgtgtggtatatacacatacacagatacat--------gtaagcatatggaata 172
|||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 235 cttctctgtgtggtatatacacatacacagatacatgtatagaagtaagcatatggaaga 176
Query: 173 tagaagtcaaagatcgttgtcttctctaacaccttccaccttaattttgaggaagggtct 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 175 tagaagtcaaagatcgttgtcttctctaacaccttccaccttaattttgaggaatggtct 116
Query: 233 cctac 237
|||||
Sbjct: 115 cctac 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 634
Length adjustment: 9
Effective length of query: 228
Effective length of database: 625
Effective search space: 142500
Effective search space used: 142500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_g09.g1 MSMg01no390_g09.g1 CHROMAT_FILE:
MSMg01no390_g09.g1 PHD_FILE: MSMg01no390_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:18 2005
(529 letters)
>mm_chr3_67619026_67619954
Length = 929
Score = 909 bits (470), Expect = 0.0
Identities = 514/534 (96%), Gaps = 10/534 (1%)
Strand = Plus / Plus
Query: 1 aagattgtaaatcatttgaaaattgaagtgatggcctggaaaataagccccaaattaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagattgtaaatcatttgaaaattgaagtgatggcctggaaaataagccccaaattaaga 260
Query: 61 aatatccaataagagatgggttcgaggaaataaaaggaggatcttaaagttgggtgtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatccaataagagatgggttcgaggaaataaaaggaggatcttaaagttgggtgtatg 320
Query: 121 aggcaatttctttccagcttgcttggtggaattggaggaacaccacaatagcagacttga 180
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gggcaatttctttccatcttgcttggtggaattggaggaacaccacgatagcagacttga 380
Query: 181 caaaggactggaaaggaaggacaaagggcatgtttaacaacacatgggaagttcacatag 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 caaaggactggaaaggaaggacaaagggcatgtttaacaacacatgggacgttcacatag 440
Query: 241 aa-----tcttttttggctcaacatcttgcctggtgcctaccatttcacagtctttgatg 295
|| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacccaggc-----tggttcaacctcttgcctggtgcctaccatttcacagtctttgatg 495
Query: 296 aaaggatttcaaatgtccaaccacttaaaatagatggatatttatcatccatattcttct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaggatttcaaatgtccaaccacttaaaatagatggatatttatcatccatattcttct 555
Query: 356 ctggattggttgaaaagaaggaattattttgatccccgctagaagatctgctgaaatcac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctggattggttgaaaagaaggaattattttgatccccgctagaagatctgctgaaatcac 615
Query: 416 ataaggaattgctcctctatagtttgatacatacatattttgtaaatatgaatggctttt 475
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 616 ataaggaattgctcctctatagtttgatacatacatattttgtatttatgaatggctttt 675
Query: 476 attctttcatctgtccctattttttctactaggtactgttttatttttaaactc 529
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 676 attctttcatctgttcctattttttctactaggtactgttttatttttaaactc 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
