BAC Information

Click to search

BAC

Clone NameMSMg01-390L02
Chromosome3 (Build37)
Map Location 44,917,782 - 44,918,243
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484
Downstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390L02.T7 (MSMg01no390_l02.b1)MSMg01-390L02.TJ (MSMg01no390_l02.g1)
ACCAG492644AG492645
length741802
length of high quality
(start - end)
462 (82 - 543)106 (82 - 187)
definitionCHROMAT_FILE: MSMg01no390_l02.b1 PHD_FILE: MSMg01no390_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:41 2005CHROMAT_FILE: MSMg01no390_l02.g1 PHD_FILE: MSMg01no390_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGGGAGGTTCGAGCTCTCCATTGCCCCCATGAGCATCC
GCCTGTCCCCTCCAGGGGTGGCCGTATTTTTCCTGCTAGGACTCGGGGTG
CTCTGCTGCCCCTGAGCCCCTGATTGGGTTTCCTGGCCTACAACTGATTG
GCCCGCTTCAGCCTCTATGACCTGGGAGGAGGGCCCGAGGCGGGCAAGGC
CAAGATGGCATTCACCTCCAAGCAAAGTTTTATCATCCTATTAAGGTTGC
TGTGGTGCTAATAAAGAATTGTAAGATATATTCGTATATTTTGGAAAACC
TATAACAAAAATTGTGTCTTAAGAACCTGACAATGTGTCTGTTCCTTGTT
AAAAACAGCAAATAAATTGTTATTACAGAATATTAATATTTGATCTATTG
CATACCATCATTTTAAATTAAATTGACAATCATTATCCCAAAGAGAAGTT
AAAAATTGTTTTTATGCATGCTTTTATATCTTCTATAAATCCATGCATGC
ATGCATCCCAATTACTGTGTTTAAAAACAGCCCTTTTATGGGAGAAATGT
ATATGTGAATTGGATCCCACCCTTATTCTTTTGAGTTTTCTCCCGCTTCC
CCACAGATAATTAAATTGCGTGCTGTACACGGCGTTTTAAATCGTCGATA
ATCCCCCTTTACTTCCCATCCTTACTAACATACCCCACCTT
CGGCTGCGTTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGCTCTTCAGTCTTCA
AGAACTCTGAGGAGAGAAATTAGACTCCACACAAAGTGAGGACCAGCAGA
GGAGAGGAGGGGAGAGGAGAGAAGGGGAGGGGAGAGGATTCTTTTTTTTT
TTTTTTTTTTTTTTTCTTTCTTTTTTTCTTTGCCTTTTTGTGTTCTTTGT
CTCTTTTTTTTTTTTTCTTTTTCTTGTTCTTTTTTTTTCTTTTTTTTGCG
GCTTTTTTTTTTTCCTCCTTTTTTTTTTTTTTTTTTCTTCTTCTTTTTCT
TTTTCTTTTCTTCTTTTTTTCTTTTTTTTTTTTTTTTTCTTTTTTTCTTT
TTTTTTTTTTTCTTTCTTTTTTTTCCCCTCTTTTCCTTTTTTTGTTTTCT
TTGTTCTTTTTTTTTTTCTTTTTTTTCCCCTTTTTTTTTCTTCTCTTTTT
TTTTTTTTTTTTTTCTTCTTTTTTCTTTTTTTTTTTCTTTTCTTTTTTTG
TTTTTTGTCTTCTCTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTT
TTTTTTTCTTTTTTCTCTTTTTGCTTTTTTCCTTTTCTGTTCTCCTTTCT
TTTTTTTTTTTTTTTCTTCTTTCTTTTTTTTTTTTCTTTTTTTCTTTTTT
CTTTTCTTTTTTTTCTTTTTTTTCTCTTCTTTTTTTCTATCTTTGTTTCT
TTTTTTCTTTTTTTCTTTCTCTTTTTCTTTCTTTTTTTTTTTTTTTCTCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_l02.b1 MSMg01no390_l02.b1 CHROMAT_FILE:
MSMg01no390_l02.b1 PHD_FILE: MSMg01no390_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:41 2005
         (462 letters)



>mm_chr3_44917582_44918443
          Length = 862

 Score =  855 bits (442), Expect = 0.0
 Identities = 457/462 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcccccatgagcatccgcctgtcccctccaggggtggccgtatttttcctgctagga 60
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 attgcccccatgagcatctgcctgtcccctccagggatggccgtatttttcctgctagga 260

                                                                       
Query: 61  ctcggggtgctctgctgcccctgagcccctgattgggtttcctggcctacaactgattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcggggtgctctgctgcccctgagcccctgattgggtttcctggcctacaactgattgg 320

                                                                       
Query: 121 cccgcttcagcctctatgacctgggaggagggcccgaggcgggcaaggccaagatggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgcttcagcctctatgacctgggaggagggcccgaggcgggcaaggccaagatggcat 380

                                                                       
Query: 181 tcacctccaagcaaagttttatcatcctattaaggttgctgtggtgctaataaagaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacctccaagcaaagttttatcatcctattaaggttgctgtggtgctaataaagaattg 440

                                                                       
Query: 241 taagatatattcgtatattttggaaaacctataacaaaaattgtgtcttaagaacctgac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatatattagtatattttggaaaacctataacaaaaattgtgtcttaagaacctgac 500

                                                                       
Query: 301 aatgtgtctgttccttgttaaaaacagcaaataaattgttattacagaatattaatattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgtgtctgttccttgttaaaaacagcaaataaattgttattacagaatattaatattt 560

                                                                       
Query: 361 gatctattgcataccatcattttaaattaaattgacaatcattatcccaaagagaagtta 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gatctattgcataccatcattttaaattaaattgacaataattatcccaaagagaagtta 620

                                                     
Query: 421 aaaattgtttttatgcatgcttttatatcttctataaatcca 462
           |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 aaaattgtttttatgcatgcttttgtatcttctataaatcca 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)