BAC Information

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BAC

Clone NameMSMg01-390P09
Chromosome3 (Build37)
Map Location 88,383,573 - 88,384,034
singlet/doubletsinglet
Overlap geneSsr2
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536
Downstream geneArhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390P09.T7 (MSMg01no390_p09.b1)MSMg01-390P09.TJ (MSMg01no390_p09.g1)
ACCAG492848AG492849
length741752
length of high quality
(start - end)		144 (180 - 323)474 (83 - 556)
definitionCHROMAT_FILE: MSMg01no390_p09.b1 PHD_FILE: MSMg01no390_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:02 2005CHROMAT_FILE: MSMg01no390_p09.g1 PHD_FILE: MSMg01no390_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTCTATAATTTGCGGCCGCTAAANGAANTACCACTTTCAACAACCA
CCGCGGAATNAGNATAGTGACACAACACTGGCTTATTCAAACGGCAGNAG
AAAGATTACATGTCAGCAAAATTTAATACTGCAGGTCAGGGTGTCAGGGT
TCTGTGAGTTGCTGACTTAGTTCAGATAGCCCTGTTATGTCCTCACATTC
CTCTTTATCTTTATGTTCACGCTGTTCCCAGGAATGCTTTAACAACGAGG
CATGCCCTTTTTTGCTTTTCTTTGTTATCAGCCCCAGGCAGCCTCTAGGC
TCACAAACAACTAGCAATTTCTGTGCATTCTATATGACTTACAGGTCTTG
AAATTTCATCTTTCTTTCAGGACCGGTGGCTCAGTGGTTAAGATCATGGA
CTGTGGGTCCAGAGGACCCCCCCCCACATCCCAGCAACTGATTGATGGCT
CCTAGCTGTCTAGTCTGTCATGGAGAGATGGCTCACCAGTTAGATAAAGA
GCACTGACCACTCTTCCCAAGGTCCTGAGTTCAAATCCCAGTAACCTCAT
GGTGACTCACAACCATCTGATGCAGCCTTCTGGCCCGAGGATTTATATTG
CCCCACACAACTCCTACCTTCCCTACCTCCGACACTTGACACCTGAACGC
CACGCGACCTCTTTGTTGTTCTTCCTATCTACAGTCTTCCAGCTGGAACT
GCTCTATAACCCTTTCCCCCCTCCCTCCATTCTCGTCCCCC

CCCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCCAACAAAACGTT
CTCTATGCCCACGTGGAAACTCGGAATTCAGAAGGAAGCTGGCGAACTCT
AGGCCGTTACCTGGAGCCGACGTTGTAGATGTTATACTGCAGGGTCAGGT
CCCTCCCTTCCACAGCGTATCTGTTGAGCAATGATTTGGAGGCCAAAAGC
CTGGCTCCTTCTTCTGCTTGACTGACGGCTAACAGAGCCAACACCACAAC
CGCCAGCAGCCTCATCTTTGGAAAAAAGTTTAGTGAGCAATCGACCCAAG
CATGGGAAACACTGCCAGCCAGGCAGCCTGTGCGGCGCCACACTCCAGCC
CCGCCGCCAGGTCGGCAGCCGCGAGCCCCGAGAACCGCCCAAGCCACAGC
AGTGTGCACCGCGCTGCCGGCCAGGCGGGGTCAGCGGGGACCCCAGCGCT
CTTGCGTCTCCCAGACTCACCGTGAGCACCCCAAACGCCTCCCTGGGCCA
CAGACAACCGGAAAACAACGTCAGCCTCCGAAAGACCGGAAACGGATCTG
ACCGGAAACCCTGATGTCCCTTCCTGTGCCCTATGGATGTTGGAGTTCTG
AAACAAGCCCCACCCTCCCCCTTATGGCGGCTGATCCCCCCCAGAAGTGA
AGTACCTAAAGGCCCTGACTCTTTCCTGTGGGGCCTCCCATTTCTTCCCC
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_p09.g1 MSMg01no390_p09.g1 CHROMAT_FILE:
MSMg01no390_p09.g1 PHD_FILE: MSMg01no390_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:02 2005
         (474 letters)



>mm_chr3_88383489_88384362
          Length = 874

 Score =  828 bits (428), Expect = 0.0
 Identities = 457/474 (96%), Gaps = 12/474 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccccaacaaaacgttctctatgcccacgtggaaactcggaattcagaaggaagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 actccccaacaaaacgttctctatgcccacgtggaaactcggaattcagaaggaagctgg 487

                                                                       
Query: 61  cgaactctaggccgttacctggagccgacgttgtagatgttatactgcagggtcaggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgaactctaggccgttacctggagccgacgttgtagatgttatactgcagggtcaggtcc 427

                                                                       
Query: 121 ctcccttccacagcgtatctgttgagcaatgatttggaggccaaaagcctggctccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctcccttccacagcgtatctgttgagcaatgatttggaggccaaaagcctggctccttct 367

                                                                       
Query: 181 tctgcttgactgacggctaacagagccaacaccacaaccgccagcagcctcatctttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tctgcttgactgacggctaacagagccaacaccacaaccgccagcagcctcatctttgga 307

                                                                       
Query: 241 aaaaagtttagtgagcaatcgacccaagcatgggaaacactgccagccaggcagcctgtg 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaaagcaaagtgagcaatcgacccaagcatgggaaacactgccagccaggcagcctgtg 247

                                                                       
Query: 301 cggcgccacactccagccccgccgccaggtcggcagccgcgagccccgagaaccgcccaa 360
           ||||||||||||||||||||||||||||||| ||||||||||            ||||||
Sbjct: 246 cggcgccacactccagccccgccgccaggtccgcagccgcga------------gcccaa 199

                                                                       
Query: 361 gccacagcagtgtgcaccgcgctgccggccaggcggggtcagcggggaccccagcgctct 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gccacagcagtgtgtaccgcgctgccggccaggcggggtcagcggggaccccagcgctct 139

                                                                 
Query: 421 tgcgtctcccagactcaccgtgagcaccccaaacgcctccctgggccacagaca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tgcgtctcccagactcaccgtgagcaccccaaacgcctccctgggccacagaca 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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