Query= MSMg01no391_c14.b1 MSMg01no391_c14.b1 CHROMAT_FILE:
MSMg01no391_c14.b1 PHD_FILE: MSMg01no391_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:17 2005
(336 letters)
>mm_chr3_147529974_147530709
Length = 736
Score = 536 bits (277), Expect = e-157
Identities = 322/337 (95%), Gaps = 2/337 (0%)
Strand = Plus / Plus
Query: 1 caaaagagttgagcagtgaccacatggtaagcatcctgcttgaagtgaatactgtggcaa 60
||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caaaagagttgagcaatgactacatggtaagcatcctgcttgaagtgaacactgtggcaa 260
Query: 61 gtctcaggcttctgtc-atttgaatgatgataagagaagtgggaactttgcaacaaagcc 119
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcaggcttctg-ctagttgaatgatgataagagaagtgggaactttgcaacaaagcc 319
Query: 120 attagagttaaatgataattgccaaacagtattgatgtacaccagaagtggataaactga 179
||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||
Sbjct: 320 attagagttaaatgataatcgccaaccaatattgatgtgcaccagaagtggataaactga 379
Query: 180 agttgatggatgttactggagagttaaaagtcaagtaaatgagcgagacgactccttggt 239
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 380 agttgatggatgttactggagaattaaaagtcaagtaaatgagcaagacgactccttggt 439
Query: 240 ggactctggcaagaacaactgggtagatctctgattatttgaatcatggagctgaagaaa 299
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agacacaggcaagaacaactgggtagatctctgattatttgaatcatggagctgaagaaa 499
Query: 300 tgtttctatgacctaatagcctccaaagaatagttta 336
|||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtttctatgacctaatagcctccaaagaatagttta 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_c14.g1 MSMg01no391_c14.g1 CHROMAT_FILE:
MSMg01no391_c14.g1 PHD_FILE: MSMg01no391_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:17 2005
(504 letters)
>mm_chr3_147675083_147675985
Length = 903
Score = 888 bits (459), Expect = 0.0
Identities = 493/505 (97%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 1 ctggagttaaaggtgccttataagaacggctccacagtgttataaatattattagtagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctggagttaaaggtgccttataagaacggctccacagtgttataaatattattagtagat 644
Query: 61 caatctttttttaaagaaatagtagttaagctttcccagaagtatttcttctttctgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 caatctttttttaaagaaatagtagttaagctttcccagaagtatttcttctttctgcac 584
Query: 121 tgaagccctattttaaattcaaattggaaatttccctcctt-aaaaaaaaaatcgttgct 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 583 tgaagccctattttaaattcaaattggaaatttccctccttaaaaaaaaaaatcgttgct 524
Query: 180 ctactcagaaaggtattacctaagttcgtgctaacttcccaactctcctaccctactggc 239
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 523 ctactcagaaaggtatcacctaagttcttgctaacttcccaactctcctaccctactggc 464
Query: 240 tttctttataactcctgtggagggttaaaataaaaattggaattcaacctactccagaac 299
|||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 463 tttcaaaataactcctgtggagggtt--aagaaaaattggaattcaacctactccagaac 406
Query: 300 aacacaaaattgtttggataaaacgtaaataaatttacctttcatctaaaggttaagtgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aacacaaaattgtttggataaaacgtaaataaatttacctttcatctaaaggttaagtgt 346
Query: 360 gaggaaagcacttgagcctgggataggaaagtggataaaactaatttaatttcatctcca 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaggaaagtacttgagcctgggataggaaagtggataaaactaatttaatttcatctcca 286
Query: 420 ctgtgcatatgggctttaggtgggaaaactagccatgagtgtcaaaggaagagagtgttg 479
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 285 ctgtgcatatgggctttaggtgggaaaactagccatgagcgtcaaaggaagagagtattg 226
Query: 480 caaaatgtttattgcagaaaacaca 504
|||||||||||||||||||||||||
Sbjct: 225 caaaatgtttattgcagaaaacaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
