BAC Information

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BAC

Clone NameMSMg01-391E03
Chromosome3 (Build37)
Map Location 68,396,540 - 68,396,984
singlet/doubletsinglet
Overlap geneSchip1
Upstream geneMfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
Downstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E03.T7 (MSMg01no391_e03.b1)MSMg01-391E03.TJ (MSMg01no391_e03.g1)
ACCAG493074AG493075
length740754
length of high quality
(start - end)
442 (63 - 504)242 (84 - 325)
definitionCHROMAT_FILE: MSMg01no391_e03.b1 PHD_FILE: MSMg01no391_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:24 2005CHROMAT_FILE: MSMg01no391_e03.g1 PHD_FILE: MSMg01no391_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCGCTATACGACTCCTATAGTTTGACAATCCGCGGAATTCCTCAGAAA
TTAAAGATCCCTGCTTTGCCAGTAAGGGGAATTATAGTACTTGAAACCCT
TGGAATCAGATGTTCTAAAAGGAGGGCTGAGCTGTAGTGGTAATATCTGT
GGCCGCGAAGATGTTTGTAAACATCTCTGCTTATGCTTGCTCTGTGGTCA
TCTATGCTCTGCGCTGCAGTGTTTGCAGAGATCTCTGTTTACAGTTGGCC
TGTGGTCATATGTGATCTGCTTTTTGGTTTGCTCGTGTTCTGTGCTTTTC
TGGGAAAGCCTCATGCCCATGTCAGAGAAGAAATTGATACATAGGTCTCA
TCTCACACTGTCTTCGCCACAGTGCCCACTGTCAGTGTTAGTCTGCACAC
GTTTTCCCCTCAGTGTAAAAGAGAAGAAAGATATAGGACCAGAAAGCATA
TGTTCAAACCCTATTCTTCATACCGATAGGGTAGCCTGTTGTTACACTCC
TCATCTTCAAAACAGAAGTTATTGGAGGGTTAACCATGATGTGGCTATTA
TTGCTGGCTACATTACCATCCGCCAGAAGCTCTGAACTCTCTCTGGTAAC
TCTTCAGTAAATAGAGATTCCTCTCCCTTCTGAACTGGAAAGAGGCTTCC
CTGCCCAAAAGCCCCCCGCCATGTGACCGAGGAAGCCAGTTATTGACTTA
GCCCACCACACCCAACTCAAAGCCCAAAGGGCCAATTCCC
NNNCCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCCCTAAGTGGGAT
GTCTCCGTTAGATCCCTTCCCTCAGGGATCAGAGATATCTGAGGAACAGG
AGGTGGGAAGAGTCTAGGAGCCCATGGGAATGAAGGTCACCAAGAGAACA
AGGCCCTCTACATCAAAAGATTCATGTATCTATGAACTCACAGAAATCGG
GCAGCATGCATAGGGCCTGCACAGGTGTGCACTGGATGGGGGCCTAGAGC
TGAAAGGAGAAGTGGACACATGCCTGTTTTTCTAGCCCAGAAGCAGTGTC
CTGTTGATAACCACTGGCAAATGAAAATTGAATTTAGGCCAAGGGCGTTT
CACTGGGTAAACAAACTACTCTTACCCCTAGGCAGCATGCCCAGTGGGAG
ATGCCAACACAAATAAACTCGGTGGCAGCTTTAGGGGCTCCTTGTCTAAT
TATGTGTGTCAGGGCTTTACATTGTCCCCACCCTTACCAGTGAGCGTGCG
TGCGTGTGTGCTCCCTTCCTCCTTATCCCCCCCCTTCTTCCTCCTTCCCC
TTCCCTTGCCTTATTCCCTCCTCCCCTCCCCCCCCCCCTTCTTCCTCCCC
CGTATTCCTTCCCCCCCCCCCCTCTCTCCTTTTCCCCCCTCCGTCGTGTT
TCCCCTTTCCCCCCCCCTTCCCCCTTCTCTCTTTCCTCCTCCCCTCTCTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e03.b1 MSMg01no391_e03.b1 CHROMAT_FILE:
MSMg01no391_e03.b1 PHD_FILE: MSMg01no391_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:24 2005
         (442 letters)



>mm_chr3_68396340_68397184
          Length = 845

 Score =  806 bits (417), Expect = 0.0
 Identities = 437/445 (98%), Gaps = 3/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctttgccagtaaggggaattatagtacttgaaacccttggaatcagatgttctaaaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gctttgccagtaaggggaattatagtacttgaaacccttggaatcagacgttctaaaagg 260

                                                                       
Query: 61  agggctgagctgtagtggtaatatctgtggccgcgaagatgtttgtaaacatctctgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctgagctgtagtggtaatatctgtggccgcgaagatgtttgtaaacatctctgctt 320

                                                                       
Query: 121 atgcttgctctgtggtcatctatgctctgcgctgcagtgtttgcagagatctctgtttac 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 atggttgctctgtggtcatctatgctctgcgctgcagtgtttgcagagatccctgtttac 380

                                                                       
Query: 181 agttggcctgtggtcatatgtgatctgctttttggtttgctcgtgttctgtgcttttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttggcctgtggtcatatgtgatctgctttttggtttgctcgtgttctgtgcttttctg 440

                                                                       
Query: 241 ggaaagcctcatgcccatgtcagagaagaaattgatacataggtctcatctcacactgtc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaagcgtcatgcccatgtcagagaagaaattgatacataggtctcatctcacactgtc 500

                                                                       
Query: 301 ttcgccacagtgcccactgtcagtgttagtctgcacacgttttcccctcagtgtaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcgccacagtgcccactgtcagtgttagtctgcacacgttttcccctcagtgtaaaaga 560

                                                                       
Query: 361 gaagaaagatataggaccagaaagcatatgttcaaaccctattcttc---ataccgatag 417
           |||||||||||||||||||||||||||||||||||||||||||||||   || |||||||
Sbjct: 561 gaagaaagatataggaccagaaagcatatgttcaaaccctattcttctccatgccgatag 620

                                    
Query: 418 ggtagcctgttgttacactcctcat 442
           |||||||||||||||||||||||||
Sbjct: 621 ggtagcctgttgttacactcctcat 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 845
Length adjustment: 10
Effective length of query: 432
Effective length of database: 835
Effective search space:   360720
Effective search space used:   360720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)