BAC Information

Click to search

BAC

Clone NameMSMg01-391E06
Chromosome3 (Build37)
Map Location 100,274,147 - 100,274,387
singlet/doubletsinglet
Overlap genenone
Upstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514
Downstream gene4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E06.T7 (MSMg01no391_e06.b1)MSMg01-391E06.TJ (MSMg01no391_e06.g1)
ACCAG493080AG493081
length769773
length of high quality
(start - end)
241 (62 - 302)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no391_e06.b1 PHD_FILE: MSMg01no391_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:25 2005CHROMAT_FILE: MSMg01no391_e06.g1 PHD_FILE: MSMg01no391_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAAAAGACTACCATATTCAGCACCCCGCGGAATTCTTTGTTCAT
CCCTGAAACTCATTTTTTTTTAAATTAGGTATTTTCCTCGTTTACATTTC
CAATGCTATCCCAAAAGTCCCCCATACCCACTCCCCCTTTTTGGCCCTGG
CGTTCCCCTGTACTGGGGCATATAAAATTTGCAAGTCCAGTGGGCCTCTC
TTTCCAGTGATGACCGACTAGGCCATCTTTTGATACATATGTAGCTAGAG
ACAAGAGCTCCGGGGTACTGGCTAGTTCATATTGTTGTTCCACCTATAGG
GTTGCATTCCTCNTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGG
TGGCCATGTGACCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTT
TGCCACGCCCTGGCATAGTCTCACAAGGGACAGCTATATCTGGGTCCTTT
CAGCAAAATCTTGCCAGTGTATGCAATGGTGTCAGCGTTTGTAAGCTGAT
TACGCCATGGATCCCTGGCCATGGCCACTCCCATATGGCCTCCTCATTTC
GCCCCAGCTCCAAACCTTGCCTCTGCACCCCCCCCCTGTGTCGATCTCCC
CCCCCCCTCTAAAATGGCTCCACCGCCCCCCCCCCCGGGCTTTCTCCCTT
TTTTATATACCGCCCCTCCCCCACACCCACCCCCAACTATTCCCACTACC
CCTTACCCCTCCTCCCCCCCCCCCCCTCCTCTCACTCTCAACACCATCCG
CGCACCTTCCCCCTCACTT
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCTTTGGGTTTTGTGAGGA
GACCTGAGCTGTTTCAGGGTTAAAAGGAAGGTAATGAAAAACGAACCCAA
CTTTGAAAACTGCTGGTCATCCATGACCTTAAGAGGCTACAGTTGTAATC
AAAAGAGAATGTGTTTGCACAGAACAAGGTTTGCCCAATCAAAGCTTTTG
AAGTGTGTTGGAGCCTCCCTGAATGTAAGCACTTGCTAATAGAAGCGGAA
AGCAGGACTGCTTCAGCTGTTATTTTGCTTGGGGACAAGTAAGACACTGG
AAAATTCCTGGCATCATCTTGGAGTTCTTACTACTTTATATACATACATT
TTTCCAGTCTGGCCATAATTGTCTTCTGAGGATGGAGAGAGGAGACACAG
GAGTTGTAAACCACCACTGGATGATGGCCCCACCTTGATCGGCCCCTTTT
AGTCTGCCCCGCTGTTTTGTGGTTAGAGAGCTGATGTGCGCTCTACAACC
ATTATAGCGGAAAGTGGCCCTGAACCAAGCTTCCCTTTTAAGCAATCTGC
CCCGGTTCGCGTACGCCTGCCCCTACACTGTGCCCAACCGCCCCTGGGCC
ACCCTATGTTTTTATTACACTATCCTTGCGCCCCCCCCCCCTTTCCTTCC
CCCACACCCTTTTCTCCCCCCCCCCCCCTTCTCCCCCCTTTTCTACCCCC
CCCCATACCCCCTTTACTCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e06.g1 MSMg01no391_e06.g1 CHROMAT_FILE:
MSMg01no391_e06.g1 PHD_FILE: MSMg01no391_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:25 2005
         (241 letters)



>mm_chr3_100273947_100274587
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggctttgggttttgtgaggagacctgagctgtttcagggttaaaaggaaggtaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attggctttgggttttgtgaggagacctgagctgtttcagggttaaaaggaaggtaatga 382

                                                                       
Query: 61  aaaacgaacccaactttgaaaactgctggtcatccatgaccttaagaggctacagttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacgaacccaactttgaaaactgctggtcatccatgaccttaagaggctacagttgta 322

                                                                       
Query: 121 atcaaaagagaatgtgtttgcacagaacaaggtttgcccaatcaaagcttttgaagtgtg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 atcaaaagagaatgtgtttgcacagaactaggtttgcccaatcaaagcttttgaagtgtg 262

                                                                       
Query: 181 ttggagcctccctgaatgtaagcacttgctaatagaagcggaaagcaggactgcttcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggagcctccctgaatgtaagcacttgctaatagaagcggaaagcaggactgcttcagc 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)