XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAGAA
GGTAGCCCTCAATGGAGTTGTGTATCCTTGGGACAGGCGGCTTCCTCTTT
TAGCTGCTTTGGCTCCTCCATGGTTCTTGATGGTTTTTGAATGGTTGCCA
ACAGTTCTAGGCATCATGTAGTTGCTGAATAACTTCTACTGGAAAAGCAA
TAATTTCCCCATGACTTTTTACACATGTCAGGGCTGACTTTGGCTTCTCT
GAGTACTACTTTGACTTACGAGCCTAGGAAACATCCTCATATTCTGGACT
TACTAGAATTGTAGTTTTGAAAGGCCATGGTCCAATGTGGAAAGAGGATA
TCGGTCTCCTTTTCCTACGCCCTCACATCAATCAGAGTTCAGGTCCAGAG
AGGAAATGTATGCTGAGGGGCAAAATTGTGTATTAACACATTATATTCTG
ATATGGCTGAGTTCTGGTTTAGATTGAGCATCTATCACTTATGCAAATGA
AAGATCCTCAGTTTGGGGTTACCTCACCTTCGAACAAAATGTCTTTATGT
GGTCAGTGTTCATGGCTGCAGGATTTTATGTTGGATTTTATCCCAGCCAG
AGGCAACTAGCTTTGTCTATAAAATGCCCCCATANGNCCGCTGACTGGCA
CTCCTACATAGACACTGGGGGGTTTTTGGTTGNTTGGGTGGTTTTTGGGG
GAATTTTTTTTTCTNNNTNCCCTCAGTTCTCTTCCCTCCCN

NNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
AAATGGCTGAGAAGCACCTGAAAAAAATGTTCAGCATCATTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCATGTGACAGCAGATGCTGGCGAGGACGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACC
ACTCTGGAAATTAGTCTGGCAGTTCCTCAGAAAACTGGATATAGTACTAC
CGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCA
ACAGGTAAGAAGGACACCTGCTCCACTATGTTCGTAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTANA
AAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTAT
CATCCTGAGTGCGGTAACCTATCACAAAGGAACTCACCAATATGTACTCA
CTGATAAGGGATATTAGCCCAGAAACTTAGATACCTAGATATAGAAACAT
TTGTAACCGCTGAAACCGAAAAGAAC

Query= MSMg01no391_f04.b1 MSMg01no391_f04.b1 CHROMAT_FILE:
MSMg01no391_f04.b1 PHD_FILE: MSMg01no391_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:30 2005
         (564 letters)



>mm_chr3_150163492_150164455
          Length = 964

 Score =  998 bits (516), Expect = 0.0
 Identities = 549/560 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaagaaggtagccctcaatggagttgtgtatccttgggacaggcggcttcctc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagaagggagccctcaatggagttgtgtatccttgggacaggcggcttcctc 264

                                                                       
Query: 65  ttttagctgctttggctcctccatggttcttgatggtttttgaatggttgccaacagttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttagctgctttggctcctccatggttcttgatggtttttgaatggttgccaacagttc 324

                                                                       
Query: 125 taggcatcatgtagttgctgaataacttctactggaaaagcaataatttccccatgactt 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggcatcatatagttgctgaataacttctactggaaaagcaataatttccccatgactt 384

                                                                       
Query: 185 tttacacatgtcagggctgactttggcttctctgagtactactttgacttacgagcctag 244
           |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 385 tttacacacgtcagggctgactttggcttctccgggtactactttgacttacgagcctag 444

                                                                       
Query: 245 gaaacatcctcatattctggacttactagaattgtagttttgaaaggccatggtccaatg 304
           | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaacatcctcatagtctgaacttactagaattgtagttttgaaaggccatggtccaatg 504

                                                                       
Query: 305 tggaaagaggatatcggtctccttttcctacgccctcacatcaatcagagttcaggtcca 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggaaagaggataacggtctccttttcctacgccctcacatcaatcagagttcaggtcca 564

                                                                       
Query: 365 gagaggaaatgtatgctgaggggcaaaattgtgtattaacacattatattctgatatggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaggaaatgtatgctgaggggcaaaattgtgtattaacacattatattctgatatggc 624

                                                                       
Query: 425 tgagttctggtttagattgagcatctatcacttatgcaaatgaaagatcctcagtttggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgagttctggtttagattgagcatctatcacttatgcaaatgaaagatcctcagtttggg 684

                                                                       
Query: 485 gttacctcaccttcgaacaaaatgtctttatgtggtcagtgttcatggctgcaggatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttacctcaccttcgaacaaaatgtctttatgtggtcagtgttcatggctgcaggatttt 744

                               
Query: 545 atgttggattttatcccagc 564
           |||||| ||||| |||||||
Sbjct: 745 atgttgtattttctcccagc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)