Query= MSMg01no391_f24.b1 MSMg01no391_f24.b1 CHROMAT_FILE:
MSMg01no391_f24.b1 PHD_FILE: MSMg01no391_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:34 2005
(169 letters)
>mm_chr3_125067656_125068226
Length = 571
Score = 265 bits (137), Expect = 1e-75
Identities = 166/189 (87%), Gaps = 22/189 (11%)
Strand = Plus / Minus
Query: 1 tgaggtatgtcattcacataagcacaatatacatgcacctataatatttacatatgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgaggtatgtcattcacataagcacaatatacatgcacctataatatttacatatgtagt 257
Query: 61 aac--atatctaattatctcaaagaacttattcacatctggaattatactaaaatcatat 118
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aacatatatctaattatctcaaagaacttattcacatctggaattatactaaaatcatat 197
Query: 119 atatatatatgtatatatatatatat--------------------gtgtgtgtgtgtgt 158
|||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 196 atatatatatatatatatatatatatatatacacacatatatatatgtgtgtgtgtgtgt 137
Query: 159 gtgtgtgtg 167
|||||||||
Sbjct: 136 gtgtgtgtg 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 571
Length adjustment: 8
Effective length of query: 161
Effective length of database: 563
Effective search space: 90643
Effective search space used: 90643
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no391_f24.g1 MSMg01no391_f24.g1 CHROMAT_FILE:
MSMg01no391_f24.g1 PHD_FILE: MSMg01no391_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:34 2005
(463 letters)
>mm_chr3_124937443_124938305
Length = 863
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%)
Strand = Plus / Plus
Query: 1 ataatggccttacacttttaacaggaggtaaagtgcgctaatgaaatcataaaaatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatggccttacacttttaacaggaggtaaagtgcgctaatgaaatcataaaaatgaag 260
Query: 61 gcagtatgcctttggccaaaccagtctttatgcttgcctgagaaccttagcttaggaaac 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtatgcctttgaccaaaccagtctttatgcttgcctgagaaccttagcttaggaaac 320
Query: 121 aatcactttattcatctatagaataaaatacttgcaactttcaacgtaagaaatgggtgg 180
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aatcactttattcatctataggataaaatacttgcaaatttcaacgtaagaaatgggtgg 380
Query: 181 aacttaggggcataattaggataattagtgtgtaactattttacattattgtattgttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttaggggcataattaggataattagtgtgtaactattttacattattgtattgttgt 440
Query: 241 acattataagcacataatgaatttcagctacatgtaatagaattgtttgtaatagagtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattataagcacataatgaatttcagctacatgtaatagaattgtttgtaatagagtca 500
Query: 301 tgacaaacacttaaagtacaacattggttattaaaattaacataggttaattttagcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacaaacacttaaagtacaacattggttattaaaattaacataggttaattttagcagt 560
Query: 361 aattttattaaaagttttaataaatgatcttttatataaagtcattggaccccatgcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattttattaaaagttttaataaatgatcttttatataaagtcattggaccccatgcttc 620
Query: 421 aattaataatataacatcaaatatactgtttaatatgcaatca 463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattaataatataacatcaaatatactgtttaatatgcaatca 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
