BAC Information

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BAC

Clone NameMSMg01-391G04
Chromosome3 (Build37)
Map Location 84,226,489 - 84,419,769
singlet/doubletdoublet
Overlap gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
Upstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream geneTmem154, LOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G04.T7 (MSMg01no391_g04.b1)MSMg01-391G04.TJ (MSMg01no391_g04.g1)
ACCAG493171AG493172
length739824
length of high quality
(start - end)
244 (67 - 310)144 (77 - 220)
definitionCHROMAT_FILE: MSMg01no391_g04.b1 PHD_FILE: MSMg01no391_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:35 2005CHROMAT_FILE: MSMg01no391_g04.g1 PHD_FILE: MSMg01no391_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,226,489 - 84,226,732)(84,419,626 - 84,419,769)
sequence
TTGCGGCCGTAAACGACTCACTATATTCAGAAAATCCGCGGAATTCACTT
CCCATGTGTTCCTGCTTCATGTTGGTCTGAGGTGTGACAGAGAAATCTGG
CTCACACTGCAGATGTTGAATTCAAGCTAGACTGGCAAAGACTGCTGATC
CTCACTCCATGTCTCTAATCCTGATCCGTGAAGTACTGAAAAGAGACCTC
AGTTCCTCTGCACCTTGGCTCTGGCGCCATTCCCACAGACACTGTAATAT
GGAAAAGACACCACAGGTCCTGTGCCACGCTCTGCAGACCCCACCTGGCC
TGGCTGAGCAGATGTTACAGCTAAGGCACTTGAGTGACTTAGGAGCCAGG
CTCCATATGTAATTTTTGATTATGATTTCGTTTTCCTGGTGGAGGGATGT
GTTATGCACCACCTGAAGAGAAAGACTCCCCAGAGGCCTGAATAAATCAA
ATGGAGTCTTTATTTAACATTGACGTGATTGTCCCCAGCTGGAAGAGCAG
CCTCCGACCTCCCGCTGGTTTGTGTTTTTAAGGCCACCCACTGTCATTTT
CGCTACTATCTCCCCCCCCATGTTTTTTTACCCACGGGTTTTATCTTTTT
TTCTCACCGCCCCCCACAAATTTTTTTCCCCCCAATCCCCTTCCCCTTTC
CCCTCTGTCCCTTTGTTTATGGACATTTGGGCTCACCTCCAACCCCCCGC
CTTCAATCCTTCCCTCCCTCCCCCCGCAATCCTCCCTCG
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTAGGAGCTCGACAAAAACC
TCAGCTGCTGCCCTCAAACTCCACAAAGAATATCTGTGCACTGAAGGACT
TTCTTGAAATTTATATTGCTGGGGAAAGCTGCCTGCTTTTGAAATACTGC
TTTAACAGTGACCCCTAGTGTTAGGGAGAGGTCTCCACCTGATGCTCACC
CTACTTAAGAAAATTCCCTTCACCGTAGTCACTGCCAAGCTAGAGCCAAT
ATGCATTGCCAGGTGCCTTATTTTCTTATTCACTCACCTTGCCTTTGGGA
AGCTCACACTCTCTCTATTCCACGCCGCTTCCCTCCCATCACGACGTATT
GTCACACGATCTCCCACCCACCCCCCCTCGTTTATCTCTTCCCTTTATCC
CCTTCCCTTTCTCATATACTCTCTCGTTTACCCCCCACCTATCACCCCCC
CCTTCCCTTATCCCTTTTCCCGTCCCCCTACTTTATTTCCTTCTCTCTCC
CCTCCTCCCTTCTCCTTTCCCCCCCTCCCCTCCCCCTTCCCTCTCCTTTT
CCCCTCTCCCCCCTTTTTCTTCCCCCTTCCCCTTCCCCCCCCCCCCTTCT
CCCTTCTTTCCTTTCCCTTATCACTTTCCTCCGCCCCCCCCTTTTTTTTC
CCTTTTCCCTTCCCCCCCCCCCCCCACCTCTTCCTTCTCCCCCCCCTCCC
TTTTCTTTCCCCCCACGTCCCCCTTCCTCTTCCTCTTTTCTTCTCCCCCC
CCCCTCCCCCCCTTTTCTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g04.b1 MSMg01no391_g04.b1 CHROMAT_FILE:
MSMg01no391_g04.b1 PHD_FILE: MSMg01no391_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:35 2005
         (244 letters)



>mm_chr3_84226289_84226932
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgttggtctgaggtgtgacagagaaatctggctcacactgcagatgttgaattcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgttggtctgaggtgtgacagagaaatctggctcacactgcagatgttgaattcaag 260

                                                                       
Query: 61  ctagactggcaaagactgctgatcctcactccatgtctctaatcctgatccgtgaagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagactggcaaagactgctgatcctcactccatgtctctaatcctgatccgtgaagtac 320

                                                                       
Query: 121 tgaaaagagacctcagttcctctgcaccttggctctggcgccattcccacagacactgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaagagacctcagttcctctgcaccttggctctggcgccattcccacagacactgta 380

                                                                       
Query: 181 atatggaaaagacaccacaggtcctgtgccacgctctgcagaccccacctggcctggctg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatggaaaagacaccgcaggtcctgtgccacgctctgcagaccccacctggcctggctg 440

               
Query: 241 agca 244
           ||||
Sbjct: 441 agca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_g04.g1 MSMg01no391_g04.g1 CHROMAT_FILE:
MSMg01no391_g04.g1 PHD_FILE: MSMg01no391_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:35 2005
         (144 letters)



>mm_chr3_84419426_84419969
          Length = 544

 Score =  279 bits (144), Expect = 7e-80
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttaggagctcgacaaaaacctcagctgctgccctcaaactccacaaagaatatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caatttaggagctcgacaaaaacctcagctgctgccctcaaactccacaaagaatatctg 285

                                                                       
Query: 61  tgcactgaaggactttcttgaaatttatattgctggggaaagctgcctgcttttgaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgcactgaaggactttcttgaaatttatattgctggggaaagctgcctgcttttgaaata 225

                                   
Query: 121 ctgctttaacagtgacccctagtg 144
           ||||||||||||||||||||||||
Sbjct: 224 ctgctttaacagtgacccctagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)