BAC Information

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BAC

Clone NameMSMg01-391J21
Chromosome3 (Build37)
Map Location 13,245,972 - 13,246,340
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J21.T7 (MSMg01no391_j21.b1)MSMg01-391J21.TJ (MSMg01no391_j21.g1)
ACCAG493347AG493348
length787757
length of high quality
(start - end)
372 (37 - 408)439 (78 - 516)
definitionCHROMAT_FILE: MSMg01no391_j21.b1 PHD_FILE: MSMg01no391_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:54 2005CHROMAT_FILE: MSMg01no391_j21.g1 PHD_FILE: MSMg01no391_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGCCGCTAAACGATCACTATAGTTCGAGGATCCGCGGAATTCATTTTG
TACTTCCGGCTAACCTCAAAGTCTTTGAGATCCACCTGCCCCTGCCTCCT
AATTGCTAAGATTAAAGGTATGTAATACCACTATTGGCTCTTTATTATTT
TAATAGATAAGATATTAACAAATTAAATCAGCAGTTACACACAAATTTCA
CAATAAGCCACGTGAACCTTGTGGAAAAACCTCTTTCCTCCATTTGTTGT
AAAGGGTTTGCTTTGGCAATCATCTCAACACTAATTATCCTCTGGGCAAA
TTCCGGTGGTTTTACTTATTTATATGTGTCTAAATTTTTACAAAACTCCT
CTCTTTAAATAAGAGTAGATTTTATTTGTGTGTGTGTGTGTGCGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTNTCTNCNCCCCCCCCCCCNCCCCCC
CCCCCCCTCCCCCCCCCCCNNTCCCCCTCCCCCCTCCCCTCCCCCTCCCC
CCCCCTCCCCTCTCTCCCCCCCCTTCTCTCCCCCCCTCCCCTTTCCCCCC
CCCCTTTTTCCCCCCCCCTCCCCCCCCCCTCCCCCCCCCCTCCCCTCTTC
TTTTTTCCTCCCCTCCTCCCCCCCCTTCTCTTTTCCTTTTCCCTCCCCTC
CCTTCCCCCCTTTTCCTCCTCCTCTCTTTCTTCCTCTCCCCCTCTTCTCT
CCCCTCCCCCCCCTTTCTTTCTTCCCCTTCTCCCCCCTTTCTTCTCCTCT
NTCCCCCCCCCCTCCCCCCCCTCCCCCTCCCCCCCCN
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGTCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAACAAGAATGA
ATTTATTGAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GCGAGGCAACACATTCCCAAGAAACTTAATACATATATATTCCCTGAACA
GTGCATATATTCCCCCCCCTACGTACCCCCCAGATCCCCGATACCTTTTG
CCTACCTCCGATACTTCTCAAGAATTGAGACTGGCGGGGGCACCCATGGC
CCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j21.b1 MSMg01no391_j21.b1 CHROMAT_FILE:
MSMg01no391_j21.b1 PHD_FILE: MSMg01no391_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:54 2005
         (372 letters)



>mm_chr3_13245801_13246572
          Length = 772

 Score =  667 bits (345), Expect = 0.0
 Identities = 364/371 (98%), Gaps = 2/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcattttgtacttccggctaacctcaaagtctttgagatccacctgcccctgcct 61
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaattcattttgtacatcaggctaacctcaaagtctttgagatccacctgcccctgcct 481

                                                                       
Query: 62  cctaattgctaagattaaaggtatgtaataccactattggctctttattattttaataga 121
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cccaattgctaagattaaaggtatgtaataccactattggctctttattattttaataga 421

                                                                       
Query: 122 taagatattaacaaattaaatcagcagttacacacaaatttcacaataagccacgtgaac 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 taagatattaacaaattaaatcagcagttacacacaaatttcacaataagccacatgaac 361

                                                                       
Query: 182 cttgtggaaaaacctctttcctccatttgttgtaaagggtttgctttggcaatcatctca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttgtggaaaaacctctttcctccatttgttgtaaagggtttgctttggcaatcatctca 301

                                                                       
Query: 242 acactaattatcctctgggcaaattccggtggttttacttatttatatgtgtctaaattt 301
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 300 acactaattatcctctgggcaaattctggtggttttacttatttatatgtgtctaaattt 241

                                                                       
Query: 302 ttacaaaactcctctctttaaataagagtagattttatttgtgtgtgtgtgtgtgcgtgt 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 240 ttacaaaactcctctctttaaataagagtagattttatttgtgtgtgtgtgtg--cgtgt 183

                      
Query: 362 gtgtgtgtgtg 372
           |||||||||||
Sbjct: 182 gtgtgtgtgtg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)