BAC Information

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BAC

Clone NameMSMg01-391M21
Chromosome3 (Build37)
Map Location 25,438,590 - 25,439,094
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M21.T7 (MSMg01no391_m21.b1)MSMg01-391M21.TJ (MSMg01no391_m21.g1)
ACCAG493490AG493491
length783778
length of high quality
(start - end)
424 (63 - 486)505 (72 - 576)
definitionCHROMAT_FILE: MSMg01no391_m21.b1 PHD_FILE: MSMg01no391_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:08 2005CHROMAT_FILE: MSMg01no391_m21.g1 PHD_FILE: MSMg01no391_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTATACGACTCCTATAGTTCGAGGATCCGCGGAATTCACTATTCT
CTCCTTGCAGCTGTAAATGCTCGTGAGAGCAATGAACTCCCTTTTTCAGA
TGGAAAAGGGTTACTGACAGACATGTCAGGAGAAACCGGCTGCCACCCTT
TGGGACATCCCAGGAGTTCTGAGGGAGTTCTAGGGATACCTGGAGATCTC
CTATCAGTGTGCCAAGTGAGAGTGTGCTCACTCGGCTGTCTGTTTCTGTT
ACTGGGTGCCAAGTGAGTGTGTGCTTTCTTGGCCATCTTATTGGGGCCTG
GTCTTGGTTATTGTATTCTTTTTTGTGTATATGTTTTTTTTTCCCTGTAT
GTGACTCTGATGATGGGACCGACTATTATCATGCCCCTTGGACTGACCCT
TGATCACTCGACTGAAATTAAGACTAACACTCACATTCTCTCTGTGGATG
TCTGAAATCGATTTTAGAGAACTTTCTGATCTACAGAATGGCCAGCTTTG
ATGATAGTTGGCCACTAGAGGGCACTCTTTGTTTGGTTCTGTTCTCCGCT
CTTCAAGTTGTTTTACCGAGGCGACCCGGGCCCCTCCCCCGATACGTGCC
CCACCTTCTTCATCCAAAAAAATTTATCCCCGGACCCCCCCTCCCCCTCT
CCGGTTAAAACCCTGGGGATAAAAAAAAAAAAACCCGGTTCCCCCATCCT
GGGCCCTCTGCCCTCCCCAAGGGGAAAACAAAAATTTTACATCGGCCCGC
GGTTCGCATTCACCCCTCCCCCTTTTTCTCCCA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAACATTTATTCCATATTAAATCAACAT
AATTATTTCCCAAGCTCTTGGTGAATGGTTCACCTGAGGATATATGATAT
GTGGCAGAGAACATGGGTATTTTACTGAAAAGCTGATTTGACCAAAATGC
TGTACATAAGACTTTAGAAAAATTTATATCCAGAGATGTTTCTTAACAAC
ATGTTTATCCAATCAAGAAAAAAGATACAAATGACAGTGTGATTAAACCT
TTAAAGCATTTTTCCTTTCTTTTTATGCATAATACATTCATTAAGGAAAA
AGACTATATATCATGATAATATGTTTTATTCTTCAGCTTAATATATTTCA
ATTTATATCTCTTAACATAATATTTTTAATTGGTATTAATTCTATCTTCT
CTATTATAAATAGAAATATTTGAATTTCCATGTTTAAACATGCTTGAAAC
TTTCTCACAGGCAGTTGCTGTTGTTGTAACCTTTTTCTCACCCCATAAAA
GCTAACATGAGATGAAATAACTAATACCCGTGCTCATTAGATATATGCAT
ATTTGCCGCTAAAGAGGCTCCAGCAGTAACGTTACAAATATCCTTAATTC
CGAATACTTCTACAAACCTTTTATTTTGAATTCTGAACCCCCCCAACCGG
CCCGTGAATACCCTACCCCTGAAGAAAAACTTCCCCTCAACCCTTCTCCC
CGTTATAAGGAAAATACCATTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m21.g1 MSMg01no391_m21.g1 CHROMAT_FILE:
MSMg01no391_m21.g1 PHD_FILE: MSMg01no391_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:08 2005
         (505 letters)



>mm_chr3_25438390_25439294
          Length = 905

 Score =  922 bits (477), Expect = 0.0
 Identities = 498/509 (97%), Gaps = 8/509 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaacatttattccatattaaatcaacataattatttcccaagctcttggtgaatggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgaacatttattccatattaaatcaacataattatttcccaagctcttggtgaatggttc 646

                                                                       
Query: 61  acctgaggatatatgatatgtggcagagaacatgggtattttactgaaaagctgatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 acctgaggatatatgatatgtggcagagaacatgggtattttactgaaaagctgatttga 586

                                                                       
Query: 121 ccaaaatgctgtacataagactttagaaaaatttatatccagagatgtttcttaacaaca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 585 ccaaaatgctgtacataagactttaggaaaatttatatccagagatgtttcttaacaaca 526

                                                                       
Query: 181 tgtttatccaatcaagaaaaaagatacaaatgacagtgtgattaaacctttaaagcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgtttatccaatcaagaaaaaagatacaaatgacagtgtgattaaacctttaaagcattt 466

                                                                       
Query: 241 ttcctttc----tttttatgcataatacattcattaaggaaaaagactatatatcatgat 296
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttcctttcacag----tatgcataatacattcattaaggaaaaagactatatatcatgat 410

                                                                       
Query: 297 aatatgttttattcttcagcttaatatatttcaatttatatctcttaacataatattttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aatatgttttattcttcagcttaatatatttcaatttatatctcttaacataatattttt 350

                                                                       
Query: 357 aattggtattaattctatcttctctattataaatagaaatatttgaatttccatgtttaa 416
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aattggtattaattctattttctctattataaatagaaatatttgaatttccatgtttaa 290

                                                                       
Query: 417 acatgcttgaaactttctcacaggcagttgctgttgttgtaacctttttctcaccccata 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acatgcttgaaactttctcacaggcagttgctgttgttgtaacctttttctcaccccata 230

                                        
Query: 477 aaagctaacatgagatgaaataactaata 505
           |||||||| ||||||||||||||||||||
Sbjct: 229 aaagctaaaatgagatgaaataactaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)