CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCCCCTCAGAATGTTGTTAGTGGTTTGTTTGATAATCCATCAAA
ATAAAAATAAAATCAGTATATAAAATATTCACCCCCACGGCTATGAAAGT
AATTTGTATTGAACTTTAGGAAATGTTTTATAATTTCAACCACTTTGACT
ATAGAATTTTTAAAATGATACTTTATCATAAATATTTTAGAAAATACTAG
TCTGGTGTTTCTCATCCATATTCAAATTTAAATGTGTTCATCTTCACTTT
ACTTGTAACCAAATAGATAAAATATTATGTGTATTATATGGTGGTATACA
ACTGTCATCTCATTCCAAAAGACAGGCAGCATCCTGCTTTTGATACCAAC
TTCAATGCAAGCATGCAAGCAAACAAACAAACAAAGTACCCAAAGAACAA
AAGCCCAATGGCAACCAGAAAGTAACCACAAACGAATAATACAATGATAT
ACATAATACATACAATGACAAACTGTGGGATATGTTTATAATATTATTTA
CAGAAATGGCATTTTTTAAAAAATTTCCCTTGCATTACAGCATTTATGAT
ATAGTTTTCTGTTGGAGGTTGGGTGAAGCTTCAATATTTCTGTGATCCAG
GGAGATCTTCACATTTCTTTCTTTCCATTTATGACATCAAAGAATGGGCA
CTTTCTACCTTTTTTTCTCCCATTGCTTCTTGTGGAGCTGGCAATTATTT
TCTTTAACTGCCCCCCTTA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGAAAATTGATGAGGACACTTTATTCTTGT
TTTTATATAATCCATGAGGTTTAGTGAGAAATACACTTAAACACTTGAGT
GGCCTAGAAGATGATCAGACCACCCGACCTGTCTGAAGGGAAATATGGCA
AATTATGGAGCTGCCTTCAAGTTGTGCAAAGAATTCCAGGATTTCAGCTT
CAGTGAGCCATCATTTATGCATGGTGATTTATGTGTATCTGTGGTCTTAT
CTGCTCCTGTATATAATCATTTACCCATAACGCAATAAAGCTCATCTATT
CTCCACACTGGACTTCGGATTCATTCTACTTTGTTTTGCAATGGGTTTCC
TATCTGGGGTGAACAGACATGTGTTTACAACCCTCTAGCAACAGTTAAAC
ATCATAGAGATTGTTGCTTTTTAGGTCTTGGCTAACAATCAAAAGTATGG
CTGGTCCCATTCAGTCATAATTATGCATGGCATTTAAATCCCTGTTCGAG
TCCACAGACGATACCCAAGGAAAATTATTCGCTATTTAGTTTTTTCCAAC
TTAAACCCCACCCCGCTGTTAGCAGCCCCAAATACGCAAAAATTTTTTTT
TTCTCCCAACCTTTTTTGGCCCGCACATAAATCTTCATTGGCTGGGTCAA
TTCCCACCCCCCCCCCCCTGCTCCCCTTTTTTTCGGTT

Query= MSMg01no392_a06.b1 MSMg01no392_a06.b1 CHROMAT_FILE:
MSMg01no392_a06.b1 PHD_FILE: MSMg01no392_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:24 2005
         (597 letters)



>mm_chr3_45463584_45464580
          Length = 997

 Score = 1102 bits (570), Expect = 0.0
 Identities = 588/594 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcccctcagaatgttgttagtggtttgtttgataatccatcaaaataaaaat 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 797 ggaattcctcccctcagaatgttgttagtggtttgtttgataacccatcaaaataaaaat 738

                                                                       
Query: 64  aaaatcagtatataaaatattcacccccacggctatgaaagtaatttgtattgaacttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaatcagtatataaaatattcacccccacggctatgaaagtaatttgtattgaacttta 678

                                                                       
Query: 124 ggaaatgttttataatttcaaccactttgactatagaatttttaaaatgatactttatca 183
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 677 ggaaatgttttataatttcaaccactttgactatagaattttaaaaatggtactttatca 618

                                                                       
Query: 184 taaatattttagaaaatactagtctggtgtttctcatccatattcaaatttaaatgtgtt 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taaatattttagaaaatacttgtctggtgtttctcatccatattcaaatttaaatgtgtt 558

                                                                       
Query: 244 catcttcactttacttgtaaccaaatagataaaatattatgtgtattatatggtggtata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catcttcactttacttgtaaccaaatagataaaatattatgtgtattatatggtggtata 498

                                                                       
Query: 304 caactgtcatctcattccaaaagacaggcagcatcctgcttttgataccaacttcaatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caactgtcatctcattccaaaagacaggcagcatcctgcttttgataccaacttcaatgc 438

                                                                       
Query: 364 aagcatgcaagcaaacaaacaaacaaagtacccaaagaacaaaagcccaatggcaaccag 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 aagcatgcaagcaaacaaacaaacaaagtacccaaagaacaaaagcccaaaggcaaccag 378

                                                                       
Query: 424 aaagtaaccacaaacgaataatacaatgatatacataatacatacaatgacaaactgtgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaagtaaccacaaacgaataatacaatgatatacataatacatacaatgacaaactgtgg 318

                                                                       
Query: 484 gatatgtttataatattatttacagaaatggcattttttaaaaaatttcccttgcattac 543
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 317 gatatgtttataatattatttacagaaatggcatttttaaaaaaatttcccttgcattac 258

                                                                 
Query: 544 agcatttatgatatagttttctgttggaggttgggtgaagcttcaatatttctg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agcatttatgatatagttttctgttggaggttgggtgaagcttcaatatttctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)