BAC Information

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BAC

Clone NameMSMg01-392A14
Chromosome3 (Build37)
Map Location 51,846,417 - 51,846,937
singlet/doubletsinglet
Overlap genenone
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A14.T7 (MSMg01no392_a14.b1)MSMg01-392A14.TJ (MSMg01no392_a14.g1)
ACCAG493667AG493668
length779787
length of high quality
(start - end)
526 (49 - 574)322 (77 - 398)
definitionCHROMAT_FILE: MSMg01no392_a14.b1 PHD_FILE: MSMg01no392_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:26 2005CHROMAT_FILE: MSMg01no392_a14.g1 PHD_FILE: MSMg01no392_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCGGTTTAGCCCACGTTCTTAATTAGCTCCACAACCTTGGGC
AAGTCACTTCACCTTCCACCCTCGGTCCCCTCACCCTGGTAATAAGAATC
TTTGACTCTGTCCTTTTTTTTTTTTTTAAGATTTTTATCCACTTCTAAGA
TTTGACTTATGAGTATTAGTGTTAAGCATTTGCCAACACACAGGACAGTC
TGTAAGAAACTCAAATGCATTGTGCTAAGTGAATAATCCAGATAACTGGT
GTGTGTTTATATTCGCAAGACTAATGATGGGGGCGGGGGGAGGGCACATT
GGGATTCCTAGAGATTTGAGGGATGGAACTGTATGCTGCAGTGGGGTTAT
CTGAATAGTCCTACTAAGTGCTGGGAAAAATTATCTGAATAGTCCTACTA
AGTGCTGGGAAAAACCAACTATTTAGTTCTCAAAATAAGCCTACACCAGG
AAATACTGTTATCCTGTTTGGCAGCTGAGGCAATCCAACGACTAGCAGGT
GGCAGTGACAGAATTTAAACCTAGACAGCCTAGTCCTTTACTACAAAGCT
AACCCACTGTACTGAAACATTTTTAAAGTCCTGTGCCTGCGTGTGAACAG
GTGTACCCGTGCGCGAATGTTTGTGTTGGACATGTATCCAAAGAGAACCT
CCCAAACTATCCCCTCCCACACCCTCTGGGCGGGTTTTGGAAAAATGGGG
CCCTCCTTTTTCCCGGAACCCCCAAAAAA
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAACCCCCAAACCACAAGCTGTA
GTAAAATGTCTGCTCTTTGAAGCCACCTGATTTTAGTGTGACTTGTTACG
CAGTCATGATGAATTAGAATGGATTCCCAACTAGATATTTCTCTTTTTTT
CTTGCTTTTGAGTGATTTGCCTGCATGTATGTATGTGCATCATGTCCATG
TATGATGCTCACAGAGGTCAGAAAAAGATCCCCTGGGACTGGAGTTACAG
ATGGTTGTGAGCTGCCACGTGGTTTCTGGGTGGGTGCTGGGTAGGTGCTT
TCTGACTGCAGTGATACTGTGCCTAGCTTCCTTAATGTCCTGCCAGTATG
TCCCCACCCATGATGAACTATACCCTCATATTATAAGCCTAGATAACCCC
TACTCCCGCCTTTGGCATAGCTTTGATATATCCCATGACTAGCCTTCGCT
CCTTTGCTTTCGTCGAGTGATTTGCCGACTTCCCCCTACATATACTCAAC
TACCCTCCTTTCCTCCCCCCCCCTCCTTTGGCCCCTTTCTTATCTCTCCC
TCCCTTCCCTTCTTCTATTTCTTACTTCTCCGCTTTCTCCCCCCTTCTTC
CCTCTATCCCCCCCTTCCCCCTCTTCTCCCCGTATCCCTCGCCCCCCGTC
GGTTCTTCTTTTCCCCCTCTTCCTTTCCTCCCCGTTCTTCGTTTCCACTC
CCCTCCTCTCCCTTCCCCTCTCCTTTTATCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a14.b1 MSMg01no392_a14.b1 CHROMAT_FILE:
MSMg01no392_a14.b1 PHD_FILE: MSMg01no392_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:26 2005
         (526 letters)



>mm_chr3_51846214_51847137
          Length = 924

 Score =  977 bits (505), Expect = 0.0
 Identities = 518/523 (99%), Gaps = 2/523 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccggtttagcccacgttcttaattagctccacaaccttgggcaagtcacttca 63
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccggctcagcccacgttcttaattagctccacaaccttgggcaagtcacttca 263

                                                                       
Query: 64  ccttccaccctcggtcccctcaccctggtaataagaatctttgactctgtcctttttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccttccaccctcggtcccctcaccctggtaataagaatctttgactctgtcctttttttt 323

                                                                       
Query: 124 ttttttaagatttttatccacttctaagatttgacttatgagtattagtgttaagcattt 183
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttt--aagatttttatccacttctaagatttgacttatgagtattagtgttaagcattt 381

                                                                       
Query: 184 gccaacacacaggacagtctgtaagaaactcaaatgcattgtgctaagtgaataatccag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gccaacacacaggacagtctgtaagaaactcaaatgcattgtgctaagtgaataatccag 441

                                                                       
Query: 244 ataactggtgtgtgtttatattcgcaagactaatgatgggggcggggggagggcacattg 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 ataactggtgtgtgtttatattcgcaagacaaatgatgggggcggggggagggcacattg 501

                                                                       
Query: 304 ggattcctagagatttgagggatggaactgtatgctgcagtggggttatctgaatagtcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggattcctagagatttgagggatggaactgtatgctgcagtggggttatctgaatagtcc 561

                                                                       
Query: 364 tactaagtgctgggaaaaattatctgaatagtcctactaagtgctgggaaaaaccaacta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tactaagtgctgggaaaaattatctgaatagtcctactaagtgctgggaaaaaccaacta 621

                                                                       
Query: 424 tttagttctcaaaataagcctacaccaggaaatactgttatcctgtttggcagctgaggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttagttctcaaaataagcctacaccaggaaatactgttatcctgtttggcagctgaggc 681

                                                      
Query: 484 aatccaacgactagcaggtggcagtgacagaatttaaacctag 526
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aatccaacgactagcaggtggcagtgacagaatttaaacctag 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space:   471624
Effective search space used:   471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)