BAC Information

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BAC

Clone NameMSMg01-392C15
Chromosome3 (Build37)
Map Location 106,031,197 - 106,031,670
singlet/doubletsinglet
Overlap genenone
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4
Downstream geneEG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C15.T7 (MSMg01no392_c15.b1)MSMg01-392C15.TJ (MSMg01no392_c15.g1)
ACCAG493763AG493764
length750777
length of high quality
(start - end)
474 (70 - 543)405 (71 - 475)
definitionCHROMAT_FILE: MSMg01no392_c15.b1 PHD_FILE: MSMg01no392_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:36 2005CHROMAT_FILE: MSMg01no392_c15.g1 PHD_FILE: MSMg01no392_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCTATAATTTGGCGGCGCTAAACGAATCACTATTGGGAGAGGATC
CGCGGAATTCACCATATAATGATCAATAGTGTAGAATTTTTATCCAAATG
AACCACAGTTGATCTCTTTGGCATATTACAAGTATTTATTTTATCAGAGC
CACAGGTACAATGCTAAAGCAGAGGGATGAATTTCTCATACTAACCCAGA
ATAAAACAAGTGCTTCTACAATCTGTTGATATAACTTCAAGTAAATCATT
CTTCAAAAAATATCTACTACATGCTGTATAAACTTGTAAATGGTTGTCAA
ACAATCAAGTGATATTTATCCTATAATGAATGCATACATTTAACTTGCAA
ACTTATTAAGTAGGTGAAATTTTCTGGACTCACAAGAACTTTGGTATTGT
AAAAGTTTGGTCTTGGTTCTTCCTCCCAGCCCATGGCCCAAGAAATTAGA
CAGAGACTCAAAATGTATTCATAAACATCTTGTGCATATAGATAGGTTCT
TCTCTGACTAGATATAACTTAAATATTCCCTCAATTTTAACCTATGTTCT
GCCATTTGCCTGGTTACCTGTACTCAGGTACCCTGTGCCAGTCTCTTCCT
ATCAAATCTTCCCAGCAAATCTCTAGTGTTATTAGACGCGTTCTCCCGAC
CGGGCAGGATAGACGCAACCAACCAGATTCCTCTGCGGCAAAGGCTTATT
GCTTACCTCTTTCCGAGCCCCGAGTGGAAGAAGCCAGAGCGACACAAAAC

TGTAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACTTCACTCCAATGGCTAAGATCAAAAACTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAGGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTGCAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTC
CACTATGTTCATAGCAGCCTTGTTTATAATAGCTAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACCGAAAATGTGGTACATTTAC
ACAATGGAATACTACTCAGCTATTAAAAAATGAATCTATGAAATTCCTAG
GCAAATGGATGGACCTGGAAGGCATCACCCTGAGTGAGGTAACCCCCTCC
CCACGGGACCCTCACCGTATGTCCTCCCCGCACAGTGGGACATCATCCTC
GAACATCTCGTTAACCCCAGAATTCCGATATCATCTTGCCCCCCCCCCGG
TATTTTCTTCCCCCTTCAAACACCCCCCGTGGTGGTTCCCTTCCCCTCTT
TCCCTTACTGGGCCTTTTAAACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c15.b1 MSMg01no392_c15.b1 CHROMAT_FILE:
MSMg01no392_c15.b1 PHD_FILE: MSMg01no392_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:36 2005
         (474 letters)



>mm_chr3_106031143_106032016
          Length = 874

 Score =  886 bits (458), Expect = 0.0
 Identities = 470/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatcaatagtgtagaatttttatccaaatgaaccacagttgatctctttggcatattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgatcaatagtgtagaatttttatccaaatgaaccacagttgatctctttggcatattac 469

                                                                       
Query: 61  aagtatttattttatcagagccacaggtacaatgctaaagcagagggatgaatttctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagtatttattttatcagagccacaggtacaatgctaaagcagagggatgaatttctcat 409

                                                                       
Query: 121 actaacccagaataaaacaagtgcttctacaatctgttgatataacttcaagtaaatcat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 actaacccagaatataacaagtgcttctacaatctgttgatataacttcaagtaaatcat 349

                                                                       
Query: 181 tcttcaaaaaatatctactacatgctgtataaacttgtaaatggttgtcaaacaatcaag 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcttcaaaaaatatctactagatgctgtataaacttgtaaatggttgtcaaacaatcaag 289

                                                                       
Query: 241 tgatatttatcctataatgaatgcatacatttaacttgcaaacttattaagtaggtgaaa 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgatatttatcctagaatgaatgcatacatttaacttgcaaacttattaagtaggtgaaa 229

                                                                       
Query: 301 ttttctggactcacaagaactttggtattgtaaaagtttggtcttggttcttcctcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttttctggactcacaagaactttggtattgtaaaagtttggtcttggttcttcctcccag 169

                                                                       
Query: 361 cccatggcccaagaaattagacagagactcaaaatgtattcataaacatcttgtgcatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cccatggcccaagaaattagacagagactcaaaatgtattcataaacatcttgtgcatat 109

                                                                 
Query: 421 agataggttcttctctgactagatataacttaaatattccctcaattttaacct 474
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 108 agataggttcttctctgactagatataacttaaatattccatcaattttaacct 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)