BAC Information

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BAC

Clone NameMSMg01-392G10
Chromosome3 (Build37)
Map Location 59,408,253 - 59,408,522
singlet/doubletsinglet
Overlap geneEG435732
Upstream gene4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330
Downstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392G10.T7 (MSMg01no392_g10.b1)MSMg01-392G10.TJ (MSMg01no392_g10.g1)
ACCAG493944AG493945
length767792
length of high quality
(start - end)
272 (50 - 321)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no392_g10.b1 PHD_FILE: MSMg01no392_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:54 2005CHROMAT_FILE: MSMg01no392_g10.g1 PHD_FILE: MSMg01no392_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGGTTATTCCTTAGCTCATCACAAGACTAACCATCTGTAC
TATTTCAAGTTACATAACAATTGAAACAGGTTGTACACATCAGGAAGAAA
TTGAAGAAAGAAAAATTTCCTCAAGAGAATCTTTCCAGGTTCTTGTTACT
TCCCAGTGGTTTTAGAATAGGAATTTTTTAAATGAAATGAAGCCTTTCAG
AGGAGTAGAGAAAGATTCTTCAATGAGCACAGTTTGTTACAGCTTCTTCA
TGTTTATCAGGGCTTACAAGTTATTTAGCATACATGCTTGTACCTGAGGA
ACACGAAAGTTATAAGGTACTTGACCTTGTAATGTCATATTGAAATAGAA
AAGAAAATGGATGAGAAATTATTCCAATCAGATGTGGAGTACATGGAGAT
GGCTCATTCAGTAAATTATTTGTTGAAACAAGCTTGATGAGCTGATTACA
GATGGCCAGGACATAGAAACCTGGGCATAGCAGCATACCCCTGCTACCTC
ATCACTGTGTGGATAGGGTGGACATGAGGGGAATCCTGAATCTCATGTAC
AGCCCATCTAGCTCACTCAGAGACCTTAGGCCCTGTTAAAGACCCCTTTT
ACTATTAAGGGAGAGAAATCTCCAAGAACACCCCCATGGCCCGCTCTGGA
AGCTACCTCGCTAATCCTCCCCGCGAACCCTGTCTATTCTACTACCCCCC
CTCTTAAAGGCGCATCG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAAAAAGAAAGTGTCAGA
TTTCCTTGAGAGTTCAGCTCTGATTCATAAAAAAAAAAAAGGTAAGAGTT
TGAGATTTTATGTCCCCCAGATTTACTTAGGAAAAACAAATAATCTGCTC
AATGTGGTGAGGTATCTATTAGGAAAGACTGCTCAGATATATATTTAAGC
CACTATAAAGTCTTTATTAACAAATTGGAGAATATACTGTGTTGGGCACC
AGGCATGGGGAAATAAAGGGGTGTTTTAGATCCCTGTCCCACCAGAGCTC
AGGGAGACTGCTGCTTTATCTCACAGAACTTCCCTGAGATGGGTGTTGGG
TCTCACAGACTGCACAACCCCGCCTCATTCTTCCGGGGAGAGTATACTTC
CGCACACGCCTTTCTACTCCCCTCTTTTCTCTCTCCCCTTTCTCCCTTCC
GTCTTTTTTCCCTTTTTCCTTATCCCCTTTTTCCTTCCTCCCCCCCTTTT
TTTCCCCCTTCCTTCTCCCCCTTTACCTCTTCTCTCCTTCCCCTCCCCCC
CCCGTTCCCACTTTTCTTTTTTTTTTTCTCTTTTCTTCCCCCCCCTTTTC
TTTTTCCCTTTTTTCCCCCCCCCTTTTCTTCTCATGTTTTCCATTCCTCT
CCCTTTCCCCCCTCCTCCTCTTCCTATCCCCTTCTCTTTTCCTCGTCGTT
CCTTCCTTTCTCATCCCTCTTTCTCCCTTCCTTCCCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_g10.b1 MSMg01no392_g10.b1 CHROMAT_FILE:
MSMg01no392_g10.b1 PHD_FILE: MSMg01no392_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:54 2005
         (272 letters)



>mm_chr3_59408049_59408722
          Length = 674

 Score =  385 bits (199), Expect = e-111
 Identities = 253/271 (93%), Gaps = 4/271 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgggttattccttagctcatcacaagactaaccatctgtactatttcaagttac 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 205 gaattctgggaaattccttagctcatcacaagactaaccatctgtactatttcaaatgac 264

                                                                       
Query: 65  ataacaattgaa-acaggttgtacac-atcaggaagaaattgaagaaagaaaaatttcct 122
           | |||||| |||  |||| ||||| | |||||||||||| |||||||||||||| |||||
Sbjct: 265 agaacaatagaaggcaggctgtac-ctatcaggaagaaaatgaagaaagaaaaaattcct 323

                                                                       
Query: 123 caagagaatctttccaggttcttgttacttcccagtggttttagaataggaattttttaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 caagagaatctttccaggttcttgttacttcccagtggttttagaataggaatttttaaa 383

                                                                       
Query: 183 a-tgaaatgaagcctttcagaggagtagagaaagattcttcaatgagcacagtttgttac 241
           | ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct: 384 aatgaaatgaagcctttcagaagagtagaaaaatattcttcaatgagcacagtttgttac 443

                                          
Query: 242 agcttcttcatgtttatcagggcttacaagt 272
           |||||||||||||||||||||||||||||||
Sbjct: 444 agcttcttcatgtttatcagggcttacaagt 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 674
Length adjustment: 9
Effective length of query: 263
Effective length of database: 665
Effective search space:   174895
Effective search space used:   174895
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)