BAC Information

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BAC

Clone NameMSMg01-392G14
Chromosome3 (Build37)
Map Location 107,959,471 - 107,959,928
singlet/doubletsinglet
Overlap genenone
Upstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654
Downstream geneAmigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392G14.T7 (MSMg01no392_g14.b1)MSMg01-392G14.TJ (MSMg01no392_g14.g1)
ACCAG493952AG493953
length767772
length of high quality
(start - end)
456 (80 - 535)---
definitionCHROMAT_FILE: MSMg01no392_g14.b1 PHD_FILE: MSMg01no392_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:55 2005CHROMAT_FILE: MSMg01no392_g14.g1 PHD_FILE: MSMg01no392_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACACAGGATCCGC
GGAATTCTAGAATCGCTTACTAGATCCAGACAAAGAGCCATAAAACCAGT
GACTTGCCCAGAGAACTCAGAATAGGCTGGCTTCTTTAGGCCCCAAGCCA
ACAACCATGAGAACTGATTAGCCTACAGCTGGTGACTGACTCCAGCAGTC
ACCATCTCTGAATTCTTAATGAGCGGCAGACATGACATACATCTTCCATC
CTCACATCAGCGTTTAAAGCATCATCTCTAAGGAAAAGAGGGCACAAGGT
GACGTGACCTTCTCCAGATTTAATACAGCCAGAGCCAATATGCAAACCTC
AGTTTGAATATAAGGTGTTTTGAATATAGGATCTTTCCTGGTCCCATGCC
TTTCTGGGGCCCTGATGTGGCACTCAGGACAATAGCACAGATTGATATAG
GACCTAGAACCCCTTCCAGGGATTCAGAGAGAGAGAGAGAGCAGACACCA
TTGTTCTAACAAAACTACAGACAGAAAGCACTAGACTGGGTTCAGCTTTG
GGTGTGCTCGCCGGTCGAAAGGAAGACTCAGCTTCTGAGGTCGATGTGCA
TTAGTTTTTCCATATATGCAAAAGTCAAAATTCCTCCCTCCCCAGCATGA
TACAAAGTCTCTAGAACAGATAGAGCCTGCTTCCTAGGGAGCCAGGACAG
CTATCATGGCTTGGCCATAAGCCTGAAGGGGGGCCCAAGGCAAGGCCCTG
AACCCCCCCCCTAAAAG
TGTTTGGTAGTCTGGAGGCGCCCGGTTCCCAATTAGGTGACCATAGAAGT
TTCCCGCAATCAAGGAACAGGCCAAAGATGTGAAAAATATTTAGTTTGCT
GAACACAGACACATGACCAAGACAGATAATGCAATGTGGTTGTGATTGTT
AAAGAGACCAGTGTTGCTGGCAAATCGAAGGCCAGTCTTATGCCCAGACA
ACAGGGTAAGTGCCAGGATATCATGGCCCCACCCATTGAAGGCTCTAGGG
CAAACCCCCAAAGTCATTTGCATACTTTCTTTCATAAAGAGTATGCTGAT
AACATGTTTTCTTGGCACACCCTGAACCAAATCAAAATTCTATACTTCTT
CTCTCTCTCACTTTTTACCTTCTCTTATTCTCTTTGCTACCTTGGTTCAT
CTGCATGTACCACGCATGTCAGGGTTGTATACATCCCTACATAGCCGCCC
ACTTTCCCCCTTGCCCCTGTGCCCGCTTCTTTCCGTCCCTTTTTCCCTTT
CTTCCCTACCTTTTTCCTCTTCCCTCTCTTCCCTATCCCTCCTTCCATCC
TTGTCTCCCCCCCCCCTCTTCCCCTCCTTTCCATCCCTCCCTTTCTCCCG
TTCTCTTTTCTCTTCTTCTCCCTCTTCTCCCCCCCTCTTCCCTCATTCCT
CTCTCCCCTCCTTTTCCATCCTCTTCCCTCCCCCCCTNTCTCTCTTTCTC
CCCCTCTTCTCTTCCTCCTCCTCTTTTCTCCCCTCCCCTCCTCTCCCGTT
CCTTTCCCTTTTTATTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_g14.b1 MSMg01no392_g14.b1 CHROMAT_FILE:
MSMg01no392_g14.b1 PHD_FILE: MSMg01no392_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:55 2005
         (456 letters)



>mm_chr3_107959271_107960128
          Length = 858

 Score =  820 bits (424), Expect = 0.0
 Identities = 449/460 (97%), Gaps = 6/460 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagagccataaaaccagtgacttgcccagagaactcagaataggctggcttctttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagagccataaaaccagtgacttgcccagagaactcagaataggctggcttctttag 260

                                                                       
Query: 61  gccccaagccaacaaccatgagaactgattagcctacagctggtgactgactccagcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccccaagccaacaaccatgagaactgattagcctacagctggtgactgactccagcagt 320

                                                                       
Query: 121 caccatctctgaattcttaatgagcggcagacatgacatacatcttccatcctcacatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccatctctgaattcttaatgagcggcagacatgacatacatcttccatcctcacatca 380

                                                                       
Query: 181 gcgtttaaagcatcatctctaaggaaaagagggcacaaggtgacgtgaccttctccagat 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtttaaagcatcatctctagggaaaagagggcacaaggtgacgtgaccttctccagat 440

                                                                       
Query: 241 ttaatacagccagagccaatatgcaaacctca----gtttgaatataaggtgttttgaat 296
             ||||||||||||||||||||| ||||||||    ||||||||||||||||||||||||
Sbjct: 441 caaatacagccagagccaatatgaaaacctcattcagtttgaatataaggtgttttgaat 500

                                                                       
Query: 297 ataggatctttcctggtcccatgcctttctggggccctgatgtggcactcaggacaatag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggatctttcctggtcccatgcctttctggggccctgatgtggcactcaggacaatag 560

                                                                       
Query: 357 cacagattgatataggacctagaaccccttccagggattcagagagagagagagagcaga 416
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||
Sbjct: 561 cacagattgatataggacatagaaccccttccagggattcagagagagagagag--caga 618

                                                   
Query: 417 caccattgttctaacaaaactacagacagaaagcactaga 456
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caccattgttctaacaaaactacagacagaaagcactaga 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 858
Length adjustment: 10
Effective length of query: 446
Effective length of database: 848
Effective search space:   378208
Effective search space used:   378208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)