BAC Information

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BAC

Clone NameMSMg01-392K06
Chromosome3 (Build37)
Map Location 10,277,656 - 10,278,062
singlet/doubletsinglet
Overlap gene1700008G05Rik
Upstream geneZbtb10, Zfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4
Downstream geneImpa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K06.T7 (MSMg01no392_k06.b1)MSMg01-392K06.TJ (MSMg01no392_k06.g1)
ACCAG494128AG494129
length772773
length of high quality
(start - end)
424 (75 - 498)409 (75 - 483)
definitionCHROMAT_FILE: MSMg01no392_k06.b1 PHD_FILE: MSMg01no392_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:14 2005CHROMAT_FILE: MSMg01no392_k06.g1 PHD_FILE: MSMg01no392_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCATTTCGACACAGTAAAGATAAACCAGGTTCATTCCC
CTTTACCATCAACCTCTGTTTCTTAAGAATTGGGCAGTGTCGAGTCTGTA
ACCTTATGGTTCTGTACTGACTGTTCCAGGAAATGGCAAACATGCCTTTA
AATTTCAAAAAACTGTTATAACCATCATGGAGCCCTGTCTTTGTTTCACA
AGGTTATTATAACCACCTGTTGTTATGACTACCGTGATATGACCACCTTG
TCATGTTCTTCTTCTATAATCCTTTCTATTTGCTTGCCAAATCTTCCATT
TGAACATTCCCTATCCATGAGCTGTAAAACTCCTTGTTTTTCCATGCCCA
ATGCCTCTCCTTAGGGAGAGGCAGTCCAAGTACATGAATAAAAGGGCTTG
TTTTAATTAATCACTTGCTTTAAATAATCTGGCTGTGATGATTAGGAATG
GTGGGTGGTCTTTCTCCTCACAACTTTGGCATTAACAGTTGACTACGCAA
AGGATGTGCAGGACATCCTCCTTGGAGGACGCTAAAGGCTCTACCTCCCC
TTGTGCCAACACTCCTCCCAACGGAATTAAAAAACCCTCTCTTATACTCT
GAGGAAATTTGTCCGCCTTCTTTTTTCCTTTCTCTACCCCCTTAACCCCC
CTCTCGACCATTTTTCCCCCCACCCACTCTCTTCACTATTATTATATTTC
CCCTCTCTTTCCTCCCCTTCTN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGTGTAAGGCAGGGGCTAAATGGG
AGGAGGGAGAAAGAGACATACAAATAGTCCTTTCGTTTAACTATGGAGTG
TGACATCTATATTTGTCTATGGAGTGCATGTGTTACACACACACTTTGGT
AACATGCTCTGTCACACTTGTGATGCTAAAGAAAACCTGATCCACATGAC
AGGACCCTTAGCAAGTGAAAAGTTACTTCTAATTCTACATTATTGCTAAT
ATTCAATTTTAGTTTTCTTCTGCTCTTGCTAAGAAACCTGTAAGTCCCTG
ATTACCCTCTTTTTATTCTTCCTCATTGTATGCAGAAAACAAACACAAAG
GAACAAGTGAGTTTCTCCAATGAGCACTCATACATCTGTTTGAACAAGCA
ATCCCCCAGAGGGAAAATGCTGTACTCTGTGGCCTTGCTTCAAAGGAAGC
CTTGGCGTTCTGTGACTCCATGAGGTTCTGTGGAAGCACGCAACCTGTTC
CATTCCTTAAGATATTTGCCCTCCCCTCAGAAATTGGTTTCCATTCTTCT
TTTATTACCCCTCTTTCTCCATTTCTTTCCCTTTTTATTTTTTTCTAACT
GTCACTCTAATATTCATTTCTCCTCCCCATCTTTTTTACTCCCCCCCCCA
ATTACTATTTCATTTCCCACCCTTCTCTTTTCTCCACTCTTTCCCCCTCT
TTTACTCCTTCTTTTTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k06.g1 MSMg01no392_k06.g1 CHROMAT_FILE:
MSMg01no392_k06.g1 PHD_FILE: MSMg01no392_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:14 2005
         (409 letters)



>mm_chr3_10277456_10278263
          Length = 808

 Score =  719 bits (372), Expect = 0.0
 Identities = 399/408 (97%), Gaps = 1/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgtaaggcaggggctaaatgggaggagggagaaagagacatacaaatagtcctttc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agtgtgtaaggcaggagctaaatgggaggagggagaaagagacatacaaatagtcctttc 548

                                                                       
Query: 61  gtttaactatggagtgtgacatctatatttgtctatggagtgcatgtgttacacacacac 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtttaactatggagtgtgatatctatatttgtctatggagtgcatgtgttacacacacac 488

                                                                       
Query: 121 tttggtaacatgctctgtcacacttgtgatgctaaagaaaacctgatccacatgacagga 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 487 tttggtaacatgctctgtcacacttgtgatgttaaagaaaacctgatccacatgacagga 428

                                                                       
Query: 181 cccttagcaagtgaaaagttacttctaattctacattattgctaatattcaattttagtt 240
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 427 cccttagcaagtgaaacgttacttctaatgctacattattgctaatattcaattttagtt 368

                                                                       
Query: 241 ttcttctgctcttgctaagaaacctgtaagtccctgattaccctctttttattcttcctc 300
           ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 367 ttcttctgc-cttgataagaaacctggaagtccctgattaccctctttttattcttcctc 309

                                                                       
Query: 301 attgtatgcagaaaacaaacacaaaggaacaagtgagtttctccaatgagcactcataca 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 308 attgtatgcagaaaacaaacacaaaggaacaagtgagtttctccaacgagcactcataca 249

                                                           
Query: 361 tctgtttgaacaagcaatcccccagagggaaaatgctgtactctgtgg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctgtttgaacaagcaatcccccagagggaaaatgctgtactctgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space:   319600
Effective search space used:   319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)