BAC Information

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BAC

Clone NameMSMg01-392L23
Chromosome3 (Build37)
Map Location 70,993,094 - 70,993,550
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041384, LOC625868, LOC670542, EG625901
Downstream geneEG667377, LOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392L23.T7 (MSMg01no392_l23.b1)MSMg01-392L23.TJ (MSMg01no392_l23.g1)
ACCAG494209AG494210
length774753
length of high quality
(start - end)
462 (53 - 514)419 (77 - 495)
definitionCHROMAT_FILE: MSMg01no392_l23.b1 PHD_FILE: MSMg01no392_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:23 2005CHROMAT_FILE: MSMg01no392_l23.g1 PHD_FILE: MSMg01no392_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTGGATACGTCTCTGTATTGCTTATACTTTTTCTAT
TACCAAATATTACTTACTCTATAGTAAAAACTATAAATATCTTTCTTGAG
ATTCTACTACTTGAAAATGAATTTCTTATGCCCTTCAAATCTCTCATCAA
TTGCTTTACAGTACTTATCTATTTTAGATTAATGTTCTTTCAAATCAGTT
TTGATGCCAAACATTGTCTCTTCTCCAATTAATCTGAAACTCCATTTTAT
AAACTAAATGCACAAAACACTAAAAATTTGTATGTTTGAGTTGAAAATCC
ATGAAGATTTATTCTTTGAAAATACCATTATATATTCTGTGAAAAGTTCA
TGTAAAACATTGTAGTCATAAAAATCCCCATCCCCAACTTCTCCCAGACC
AATCCCAACACCCCATCTGGCAGGATGTCTACTACATGATAGACCATATG
ATAAGTGATGTACAAGAGGAACTTGAGTTTTTGAAATAACTGCTTTATTT
ACACACTGCTGTAATTTGAATGAACCCCCACAATTCATGTGTGGGAAAGT
TATCCCCAATACAAGTGACAGTGGTATTTTGAAGTAAGGCCTCGCAAGGT
GGTTTTATAATAACAAAGGCCCAAGAATAAAAAACCAATCCCTTCTTAAA
AAAAACCCCTTTTGGTTTGGACCCCCCCGAAAACTTTTCTTTACCCCCTC
CCCCCCCAAGAGACCCAAAAGGCG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATGCGGAATGGCT
GAGAAGCACAGGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACTACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGTCACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
ATGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAAT
TTATGAAATTCCTCGGCAAATGGATGGACCTGGAGGGCCTCATCCTGAGT
GAGGAAACCCTACCCCACGGAACTCCCCCAAATGTACTCCCCGAAAAGGG
GAATTTAACCCCACCCTTTATTAACCCACCAATTTAATACTATTTTGGCT
AACCCTGGAATTCCCAAAAAAAAAAAACCAAGGGTGGGCTTTTTCCCCCT
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_l23.b1 MSMg01no392_l23.b1 CHROMAT_FILE:
MSMg01no392_l23.b1 PHD_FILE: MSMg01no392_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:23 2005
         (462 letters)



>mm_chr3_70992889_70993750
          Length = 862

 Score =  785 bits (406), Expect = 0.0
 Identities = 445/458 (97%), Gaps = 2/458 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcatttggatacgtctctgtattgcttatactttttctattaccaaatattacttac 65
           |||||||||||| | ||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 662 aattcatttggagaagtctctgtattgcttattctttctctattatcaaatattacttac 603

                                                                       
Query: 66  tctatagtaaaaactataaatatctttcttgagattctactacttgaaaatgaatttctt 125
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 602 tctatactaaaaactataaatatctttcttgagattctactacttgaaaatgaatctctt 543

                                                                       
Query: 126 atgcccttcaaatctctcatcaattgctttacagtacttatctattttagattaatg-tt 184
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct: 542 atgcccttcaaatctctcatcaattgcttcacaatacttatctattttagattaatgttt 483

                                                                       
Query: 185 ctttcaaatcagttttgatgccaaacattgtctcttctccaattaatctgaaactccatt 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttttcaaatcagttttgatgccaaacattgtctcttctccaattaatctgaaactccatt 423

                                                                       
Query: 245 ttataaactaaatgcacaaaacactaaaaatttgtatgtttgagttgaaaatccatgaag 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttataaactaaatgcac-aaacactaaaaatttgtatgtttgagttgaaaatccatgaag 364

                                                                       
Query: 305 atttattctttgaaaataccattatatattctgtgaaaagttcatgtaaaacattgtagt 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 363 atttattctttgaaaataccatcatatattctgtgaaaagttcatgtaaaacattgtagt 304

                                                                       
Query: 365 cataaaaatccccatccccaacttctcccagaccaatcccaacaccccatctggcaggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cataaaaatccccatccccaacttctcccagaccaatcccaacaccccatctggcaggat 244

                                                 
Query: 425 gtctactacatgatagaccatatgataagtgatgtaca 462
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtctactacatgatagaccatatgataagtgatgtaca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)