Query= MSMg01no392_n04.b1 MSMg01no392_n04.b1 CHROMAT_FILE:
MSMg01no392_n04.b1 PHD_FILE: MSMg01no392_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:29 2005
(501 letters)
>mm_chr3_33817403_33818303
Length = 901
Score = 861 bits (445), Expect = 0.0
Identities = 489/509 (96%), Gaps = 13/509 (2%)
Strand = Plus / Minus
Query: 2 gaattctgata---ttacacctgatacggggtggaggacaataagtctctattgacagat 58
||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattctgatagag--aca-ctgatgcggggtggaggacaataagtctctattgacagat 625
Query: 59 ttagagcaactggggcagggagtcaggagggagctccgggcctgtcctgaaccgtaccta 118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 ttagagcaactggggcagggagtctggagggagctccgggcctgtcctgaaccgtaccta 565
Query: 119 agtgcatttctaaggaagggcagcttctgagaacagaagcctgtgtaaacgcgggtttag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgcatttctaaggaagggcagcttctgagaacagaagcctgtgtaaacgcgggtttag 505
Query: 179 cggctgtgtgccgccaccagggggcgctagtaagtgtagatgaaaagtcctcgggaacct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cggctgtgtgccgccaccagggggcgctagtaagtgtagatgaaaagtcctcgggaacct 445
Query: 239 gcctgcccaaatcctcttccagtctcttcgctcctctgctcctttcccatctcatcagta 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctgcccaaattctcttccagtctcttcgctcctctgctcctttcccatctcatcagta 385
Query: 299 aactaacaaatatttacagccatctctaaaaggagtttttgtgtttgattctaaatgggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactaacaaatatttacagccatctctaaaaggagtttttgtgtttgattctaaatgggg 325
Query: 359 agctgagctgacctttctagttgaaactgctttgaattcaatcggctttttgataatgtt 418
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctgagctgagttttctagttgaaactgctttgaattcaatcggctttttgataatgtt 265
Query: 419 atagcaaaataataactgctatgaaatcttaagtttaaaaagacatagtatctttttttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 atagcaaaataataactgctatgaaatcttaagtttaaaaagacatagtatttttttttt 205
Query: 479 ttt------gagactgggtctcatgtagt 501
||| || | |||||||||||||||
Sbjct: 204 ttttttttgga-attgggtctcatgtagt 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_n04.g1 MSMg01no392_n04.g1 CHROMAT_FILE:
MSMg01no392_n04.g1 PHD_FILE: MSMg01no392_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:29 2005
(413 letters)
>mm_chr7_104492150_104492962
Length = 813
Score = 783 bits (405), Expect = 0.0
Identities = 411/413 (99%)
Strand = Plus / Plus
Query: 1 cctagacaaatacattgcttttctaaagattaagcagcatttacacagtctaataaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctagacaaatacattgcttttctaaagattaagcagcatttacacagtctaataaaacc 260
Query: 61 tgttgctcatcagatgttctgcaaagctagagaaagggtgaggtttcctacatgctaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgctcatcagatgttctgcaaagctagagaaagggtgaggtttcctacatgctaaga 320
Query: 121 aagcattcttctaatgaattatatcctggcccttttttttattataagacagggacctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcattcttctaatgaattatatcctggcccttttttttattataagacagggacctaa 380
Query: 181 ctaagttgactgtcctaaccttgaacttataattctcctgttttagctctcaactatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaagttgactgtcctaaccttgaacttataattctcctgttttagctctcaactatcaa 440
Query: 241 agattactggtttgaaccatcaaactgaacaagattgaagcccacagaaaagctttttgt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattacaggtttgaaccatcaaactgaacaagattgaagcccacagaaaagctttttgt 500
Query: 301 tcagacaggaactcactgcggaaccttagctggcctggaacttgctatgtagaccaggct 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcagacaggaactcactgcggaaccttagctggcctggaacttactatgtagaccaggct 560
Query: 361 tcccttgaactcacagagatcctcctgtctctgcctccctgggtgctagaatt 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccttgaactcacagagatcctcctgtctctgcctccctgggtgctagaatt 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
