BAC Information

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BAC

Clone NameMSMg01-392N06
Chromosome3 (Build37)
Map Location 21,072,889 - 21,073,427
singlet/doubletsinglet
Overlap genenone
Upstream geneCpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392N06.T7 (MSMg01no392_n06.b1)MSMg01-392N06.TJ (MSMg01no392_n06.g1)
ACCAG494271AG494272
length766862
length of high quality
(start - end)
541 (51 - 591)183 (73 - 255)
definitionCHROMAT_FILE: MSMg01no392_n06.b1 PHD_FILE: MSMg01no392_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:29 2005CHROMAT_FILE: MSMg01no392_n06.g1 PHD_FILE: MSMg01no392_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCACACAGGATCCG
CGGAATTCTTTGTTTTACTGTTTTCAGGTTAAATTTTCTTGATAGACTGT
GAGTCTTTGTTAACTGCTGGTTTGGTTAAATTTTGCCTTATTTTCTGATT
TCTTCACAGGAGAAAAGCCAAATTTCAGTTGTCATTTTATTTCTGTTTAC
ACTGAGAAATCTTCATGAGTTATTTTCTCTCTCCTTGTGAAGAGAATAAT
GATAGTTGTATTTCAATGTGTTTCTTCTAAAATGGTTATTTCCGTTTCTG
TAAACCCTTTCCTAACAGTATTATTGAATTGAAAGTACTCTGTGGAATGA
AGTATTAGTTTCAAATGAGCTTTATTTACTTAAGATGAACGTCCACTTAG
CAATGCCACTGTGCTATCCGCATATTATAGTATACATTATAAATCTTACT
TCAGTATCATCTATCTTAAGTAACCACTCAGCATCTGATATTAAAAAAGC
AATTTGCAGTGCTCTCTGTTCACTTGGGTAATTAATCCTTTGCTTCAGTT
TAGGTTTGAGGAAGGTGCGAGAGAAGTGAGATATACTGGAACATATACCT
ACATGAAGAACGGCTAATTTGTGAAACCCTTACTGCCCAAGTTAACTGAC
AGCCTCTTTTCTTTACCATTTTATAACCCGCTCGAAAATCTTTCCTATAA
AACAAACCTCCTCCTCTACAAGGGTCCCCCCCCCCCTATTTTTTTCGGAT
ACCCCCAACTCCCCCC
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGAATTTAGTAGCATTTCCACACTGA
AGAGCCCTGCAGCAGAGCTTACACTGTCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTCCTTCCTTCCTTTGTTCCTCCCTCCTTCCCTCCCTCCCTCCCTCC
CTTTCTCCCTCCCTCCCTCCCTGTCTCTCTTTCTTCCTTTCTTTCTCCCT
CCCTGCCTCGGCGCGTGTTTGTTGTTTTTCGCGCGGGCGGGCGCCCCGGC
GANCGCCCTTTTTCTTCGCTCTGCCGTGGAGGGGGGGGTGGGTGATCCCG
CCTGTTCTGAGCACCCCCCCCCCCGGTTTTATATTAGCCTACGGTATTTG
TCGGATCCCGTCCTCAGGTTAGAGTCGACTTTTCCTCACTTTCCAAGTTC
GCTCCGGTTATTCCGTATCGCCGCCGGTCCCTTGGTTCCTCTCATTTCGT
GCCGTTTAAGTACGGAGCCGCCTTCGCATTCCTTGCCTCATTTATTCCAG
TCTACCCCCCTTCTTATTATACATCGCGCTTCGAGATTTCTAATTAACCC
CCTCCTTTCTGTCCCTCTTCCCTCTCCCCCTTTTTTGGGTGTTGAAGAAA
AGTCGGACAAGACATATTTCTTTCTTATTTTTCTTCCCCCTTATCTATCT
CCACCGACACCCGCCCCACAATTCCAAATTGTTGATAATCCGCACAATTC
ACATATGTCCCACACCTCCCCGCACTGCTGCGTGTCGTACTAGCGTCTGT
GTTTTCGGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_n06.b1 MSMg01no392_n06.b1 CHROMAT_FILE:
MSMg01no392_n06.b1 PHD_FILE: MSMg01no392_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:29 2005
         (541 letters)



>mm_chr3_21072687_21073627
          Length = 941

 Score =  934 bits (483), Expect = 0.0
 Identities = 525/539 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctttgttttactgttttcaggttaaattttcttgatagactgtgagtctttgtta 62
           ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattctttgcattaatgttttcaggttaaattttcttgatagactgtgagtctttgtta 682

                                                                       
Query: 63  actgctggtttggttaaattttgccttattttctgatttcttcacaggagaaaagccaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgctggtttggttaaattttgccttattttctgatttcttcacaggagaaaagccaaa 622

                                                                       
Query: 123 tttcagttgtcattttatttctgtttacactgagaaatcttcatgagttattttctctct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcagttgtcattttatttctgtttacactgagaaatcttcatgagttattttctctct 562

                                                                       
Query: 183 ccttgtgaagagaataatgatagttgtatttcaatgtgtttcttctaaaatggttatttc 242
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ccttgtgaagagaataatgatagttgtatttcgatgtgtttcttctaaaatggttatttc 502

                                                                       
Query: 243 cgtttctgtaaaccctttcctaacagtattattgaattgaaagtactctgtggaatgaag 302
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 501 cgtttctgtaaaccctttcctaacagtaggattgaattgaaagtactctgtggaatgaag 442

                                                                       
Query: 303 tattagtttcaaatgagctttatttacttaagatgaacgtccacttagcaatgccactgt 362
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tattagtttcaaatgagctttatttacttaagatgaacgcccacttagcaatgccactgt 382

                                                                       
Query: 363 gctatccgcatattatagtatacattataaatcttacttcagtatcatctatcttaagta 422
           |||||  | |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 381 gctatttgtatattatagtatacattataaatcttgctccagtatcatctatcttaagta 322

                                                                       
Query: 423 accactcagcatctgatattaaaaaagcaatttgcagtgctctctgttcacttgggtaat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accactcagcatctgatattaaaaaagcaatttgcagtgctctctgttcacttgggtaat 262

                                                                      
Query: 483 taatcctttgcttcagtttaggtttgaggaaggtgcgagagaagtgagatatactggaa 541
           |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 261 taatcctttgcttcagtttaggtttgtggaaggtgggagagaagtgagatatactggaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)