BAC Information

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BAC

Clone NameMSMg01-392P11
Chromosome3 (Build37)
Map Location 108,167,533 - 108,167,873
singlet/doubletsinglet
Overlap geneMybphl
Upstream geneKcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1
Downstream genePsrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392P11.T7 (MSMg01no392_p11.b1)MSMg01-392P11.TJ (MSMg01no392_p11.g1)
ACCAG494377AG494378
length795769
length of high quality
(start - end)
238 (77 - 314)343 (72 - 414)
definitionCHROMAT_FILE: MSMg01no392_p11.b1 PHD_FILE: MSMg01no392_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:41 2005CHROMAT_FILE: MSMg01no392_p11.g1 PHD_FILE: MSMg01no392_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACCCGATCC
GNNGGAATCTTTGTTACGATCAGCACCCCATTTTTTAAGGGGGTTATTTG
AATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGT
CCCCTATCAGATCTAGGGTTGGTAAAAATCCTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAATT
TTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCT
GTTCTGTTTAGAATTTTTCTCNGTGCCCTATCTTCGAGGCTTTTCCCCAC
TTTTTCCTCTTTAACTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGAT
CCACTTACACCCCCCCCCTGTACTAGGAGATAACAATGGACCCCTTCGCA
TTCCCCTACATGATAACCTTCAGCCGCGCCAGCACCATTTGCTGCAAATG
CCGCCCTCTTTCCCACTGTATGTCCTACCCTCCCTTGTCAAACACCAACC
GCCCCTCTTTGTGTCCCCTCCCTTTCTGCTCCTCCCCTTCCTTTCCCCCC
TTTTCTTCTTGTTCTTCCCCTCCTACTATTACCCTGTCTTACACCCCACC
ACTCTCCTTTTTTCTCCTCTGCTCTCCCCCCCCCCCCCCCCTTACTTCCA
CTCCCTACCTCGTCCTATCCTATCCCTTCCTCCCCCCCCCCTCTTCCGTC
TTCTCACCTCTATTCCGCGTCTCTTATCCTCCCGCTTTTCTCCTN
ACTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCAAACCCACTGCTCTTCAGACCTTACGCCCTGTTGAA
TGAGCTGGAGGTCAGAAGCAGAGATGCCAGCAGCTCAGGCCTCCCTCAAA
GCCAGAAGTCCCTCTCATATACTCTGTGCTCACACTCTCCCCTCCCTCCT
AATGCTGTAGGGTGTCATCTCACTCACAAGATAACAGGGCCACCTCAGCC
CTCCTCCCGCGGCTATTCTGGGCAGCTCTCTGATCCTCCTCTTCTCCTGG
CCCCTACTTCTCCCTTCATTTGTAGTAGTGGGTGGGGAAAAGCCAGCCCA
CTTACATAAGCCTGTGGCTGTGACCCCAGGGAGACCAGCCTGGACAGCAG
GTGCACAGCCCCTCCCTCACCAGCAACAAAGAAAATTTTCAGCTAGACCC
CAGGCATGGAGACAGCCACCACACTGGAGATAGCCTCATGCTCCCAGCGG
CAGGTAGAATCAGCTGCTGACCCAGCGGATGCTAAAGGACCCCGGACTTC
ACATCAACAGGAGGCAGGTAAGCCCTTCTCCTGCGCTCCTCGCCCTCTAT
TGAAGGTGATTCGTGGTACCCTGTTAAGGGGGGGAAGCTGCACCGCCGTG
CTAAAACCTTTCTCCCCCCCCTCTCTTTCCAAGAATCCCTCCGGGCGTCC
CCCCCCTCCCTCCTTGACCTTTCCTACCTCCCCCTCTACCTCTACTCCAC
AACCTCACCTATCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_p11.g1 MSMg01no392_p11.g1 CHROMAT_FILE:
MSMg01no392_p11.g1 PHD_FILE: MSMg01no392_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:41 2005
         (343 letters)



>mm_chr3_108167333_108168073
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 337/343 (98%), Gaps = 2/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctcttcagaccttacgccctgttgaatgagctggaggtcagaagcagagatgccagc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctcttcggaccttacgccctgttgaatgagctggaggtcagaagcagagatgccagc 260

                                                                       
Query: 61  agctcaggcctccctcaaagccagaagtccctctcatatactctgtgctcacactctccc 120
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 261 agctcaggcctccctcaaagccagaagtccctctcatatactctg--ctcacactctccc 318

                                                                       
Query: 121 ctccctcctaatgctgtagggtgtcatctcactcacaagataacagggccacctcagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctccctcctaatgctgtagggtgtcatctcactcacaagataacagggccacctcagccc 378

                                                                       
Query: 181 tcctcccgcggctattctgggcagctctctgatcctcctcttctcctggcccctacttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcctcccgcggctattctgggcagctctctgatcctcctcttctcctggcccctacttct 438

                                                                       
Query: 241 cccttcatttgtagtagtgggtggggaaaagccagcccacttacataagcctgtggctgt 300
           ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccttcagtgggagtagtgggtggggaaaagccagcccacttacataagcctgtggctgt 498

                                                      
Query: 301 gaccccagggagaccagcctggacagcaggtgcacagcccctc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaccccagggagaccagcctggacagcaggtgcacagcccctc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 741
Length adjustment: 9
Effective length of query: 334
Effective length of database: 732
Effective search space:   244488
Effective search space used:   244488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)