BAC Information

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BAC

Clone NameMSMg01-393B14
Chromosome3 (Build37)
Map Location 54,259,491 - 54,424,630
singlet/doubletdoublet
Overlap geneLOC100039951, LOC434807
Upstream gene8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn
Downstream geneB020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393B14.T7 (MSMg01no393_b14.b1)MSMg01-393B14.TJ (MSMg01no393_b14.g1)
ACCAG494478AG494479
length763763
length of high quality
(start - end)		595 (34 - 628)521 (65 - 585)
definitionCHROMAT_FILE: MSMg01no393_b14.b1 PHD_FILE: MSMg01no393_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:53 2005CHROMAT_FILE: MSMg01no393_b14.g1 PHD_FILE: MSMg01no393_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,259,491 - 54,260,081)(54,424,110 - 54,424,630)
sequence
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAAAA
TATAGTTTTTATTTGTTTAGGATTTTTGTTTGGCTAACATTGAAGCACTG
TCTTACCATGTAACCCAGGCTAGCCTCAAACTTGTAATTCACTTGTCTTA
GCTTCCCAAGTGCAAGGATTACAGATGTACTAATTTTTACTTAATATCTG
AAACAGGGCACTGTAGCCCCAGCTAGCCTACAACTTGCTATGTAGCAAAC
AATGTCCTTATATTTCTGATCCTACCAAGTGCTGGGATTACAGGCGTATG
CCACCATGGTCAGCAGCACATTTCACCTTCTGATACCTCCATTGATTGTA
AGCACTTCATGTGACTGAATGTGGGGGTGCTGCTGGGAAATCACCCTAAC
ATTCCCTCTAGCCCCTGATCCTTGGGGATCTCCATTAAATGAATTTACAC
AATATAGTGTAGAAAATACAATTCATTACAAAGTAAAGTGGGGCACCCTC
AAGGGATATGTGGAGACAATAAGCAAAGGGACATTATGCAGGAAAACACA
TTTATAAGATGAAAATGGAAAGTTATCTGAAAGACTTTGTGTCAACTAAC
ATGTTGGTAAATTTTATATTTCCTTAANGTGTGTACAAGAAATGACTTTC
CTGGAATTCCAAGAATGGCTTTATGGAAAAGAGAAAAGATATGTTTGNTC
TTTCTCAAAAGCATCCCATAGACAGTAACATCTGATTTGGGGGCACCCAC
AATGCCTGTCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAGTCTCCTTCTGGCTGCCCTTGTGATGCTTTTGGA
TCAAGATGTAGAACTCTAAGTTGTCTGTTGCCTGCAGGCTGCCATGCCTT
CCATCATGATGATAGTGGACTAAACCTCTGATACTGTAAGCCAGCCCCAG
TTAAATCTTCGACTTTATGAGAGTTGCCGTGGTCATGGTGTCTCTTCACA
GTACTGACATCCAAACTAAGACACACCTCGTGCCTATGTAGTGTAAAAGC
AGCCACACAAAATAACTGGATGCAGAGACTAGATATGATTCACTGAAATT
CCTGGAAGGGGATGCAGGATGCTGAAACTGAAATTGCAAGTATTGTTTCC
TTTGCTCATTTTTTGGTAGCCCAGGCTGGCCTGAAACTGGTGGCAATCTT
TTCAAATCATCCTCTCAAGTATATCAGCTACCACACCCAGGCCAGAATAT
GGAAACTACTCTTATCTCACAGGATTTCCAGGAAGAGAAGAGCCATTCTA
TTTAACTTGATGTGTTATCAATTAAATTATGCAATTGGGAGGGATTTTTT
CAACTTATTATGGTAATTGTGTAAGCATATTTTCAAATAGTTTTACTTGA
ACAGACAATATTGTTCAATAAATTACTAGCATGGTTTTATGACACAAGGG
TAAATATATTGGGTAAATATGAATTTATCCTTCTGGACCGGGTCTCCAAG
AATTTTTTCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_b14.b1 MSMg01no393_b14.b1 CHROMAT_FILE:
MSMg01no393_b14.b1 PHD_FILE: MSMg01no393_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:53 2005
         (595 letters)



>mm_chr3_54259288_54260282
          Length = 995

 Score = 1112 bits (575), Expect = 0.0
 Identities = 587/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacaaaatatagtttttatttgtttaggatttttgtttggctaacattgaagc 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacaaaatatagtttttgtttgtttaggatttttgtttggctaacattgaagc 263

                                                                       
Query: 64  actgtcttaccatgtaacccaggctagcctcaaacttgtaattcacttgtcttagcttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgtcttaccatgtaacccaggctagcctcaaacttgtaattcacttgtcttagcttcc 323

                                                                       
Query: 124 caagtgcaaggattacagatgtactaatttttacttaatatctgaaacagggcactgtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caagtgcaaggattacagatgtactaatttttacttaatatctgaaacagggcactgtag 383

                                                                       
Query: 184 ccccagctagcctacaacttgctatgtagcaaacaatgtccttatatttctgatcctacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccccagctagcctacaacttgctatgtagcaaacaatgtccttatatttctgatcctacc 443

                                                                       
Query: 244 aagtgctgggattacaggcgtatgccaccatggtcagcagcacatttcaccttctgatac 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 aagtgctgggattacaggcgtatgccaccatggtcagcagcacatttcacctcctgatac 503

                                                                       
Query: 304 ctccattgattgtaagcacttcatgtgactgaatgtgggggtgctgctgggaaatcaccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctccattgattgtaagcacttcatgtgactgaatgtgggggtgctgctgggaaatcaccc 563

                                                                       
Query: 364 taacattccctctagcccctgatccttggggatctccattaaatgaatttacacaatata 423
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 564 taacattccctctagcccctgatccttgggaatctccattaaatgaattcacacaatata 623

                                                                       
Query: 424 gtgtagaaaatacaattcattacaaagtaaagtggggcaccctcaagggatatgtggaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgtagaaaatacaattcattacaaagtaaagtggggcaccctcaagggatatgtggaga 683

                                                                       
Query: 484 caataagcaaagggacattatgcaggaaaacacatttataagatgaaaatggaaagttat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caataagcaaagggacattatgcaggaaaacacatttataagatgaaaatggaaagttat 743

                                                              
Query: 544 ctgaaagactttgtgtcaactaacatgttggtaaattttatatttccttaa 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgaaagactttgtgtcaactaacatgttggtaaattttatatttccttaa 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_b14.g1 MSMg01no393_b14.g1 CHROMAT_FILE:
MSMg01no393_b14.g1 PHD_FILE: MSMg01no393_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:53 2005
         (521 letters)



>mm_chr3_54423871_54424791
          Length = 921

 Score =  992 bits (513), Expect = 0.0
 Identities = 519/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtctccttctggctgcccttgtgatgcttttggatcaagatgtagaactctaagttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tagtctccttctggctgcccttgtgatgcttttggatcaagatgtagaactctaagttgt 701

                                                                       
Query: 61  ctgttgcctgcaggctgccatgccttccatcatgatgatagtggactaaacctctgatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctgttgcctgcaggctgccatgccttccatcatgatgatagtggactaaacctctgatac 641

                                                                       
Query: 121 tgtaagccagccccagttaaatcttcgactttatgagagttgccgtggtcatggtgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgtaagccagccccagttaaatcttcgactttatgagagttgccgtggtcatggtgtctc 581

                                                                       
Query: 181 ttcacagtactgacatccaaactaagacacacctcgtgcctatgtagtgtaaaagcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttcacagtactgacatccaaactaagacacacctcgtgcctatgtagtgtaaaagcagcc 521

                                                                       
Query: 241 acacaaaataactggatgcagagactagatatgattcactgaaattcctggaaggggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acacaaaataactggatgcagagactagatatgattcactgaaattcctggaaggggatg 461

                                                                       
Query: 301 caggatgctgaaactgaaattgcaagtattgtttcctttgctcattttttggtagcccag 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 460 caggatgctgaaactgaaattgcaagtattgtttcctttgctctttttttggtagcccag 401

                                                                       
Query: 361 gctggcctgaaactggtggcaatcttttcaaatcatcctctcaagtatatcagctaccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gctggcctgaaactggtggcaatcttttcaaatcatcctctcaagtatatcagctaccac 341

                                                                       
Query: 421 acccaggccagaatatggaaactactcttatctcacaggatttccaggaagagaagagcc 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acccaggccggaatatggaaactactcttatctcacaggatttccaggaagagaagagcc 281

                                                    
Query: 481 attctatttaacttgatgtgttatcaattaaattatgcaat 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attctatttaacttgatgtgttatcaattaaattatgcaat 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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