Query= MSMg01no393_c19.b1 MSMg01no393_c19.b1 CHROMAT_FILE:
MSMg01no393_c19.b1 PHD_FILE: MSMg01no393_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:00 2005
(516 letters)
>mm_chr3_122116601_122117518
Length = 918
Score = 948 bits (490), Expect = 0.0
Identities = 508/514 (98%), Gaps = 2/514 (0%)
Strand = Plus / Plus
Query: 5 gaattctccagccaatgtggcaacgagtaaacagctgttctgccaacctcttggacgcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagccaatgtggcaacgagtaaacagctgttctgccaacctcttggacgcag 264
Query: 65 actgcctgcctgcccgcctgcctgcccagcttactagcgggg-attgccacgacaccaaa 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 actgcctgcctgcccgcctgcctgcccagcttactagcgggggattgccacgacaccaaa 324
Query: 124 tccatggcaggaacctcgaggggaatgttctggaaaacactgcaagccttcttgccatgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccatggcaggaacctcgaggggaatgttctggaaaacactgcaagccttcttgccatgg 384
Query: 184 tctgcctcaggagccgatatgcctggaccactgatttattgtacattaacttcaggggct 243
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgcctcgggagctgatatgcctggaccactgatttattgtacattaacttcaggggct 444
Query: 244 tctccggctctcgttctttctgcagctgcgcatgctcaggttattttctggttgggtctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctccggctctcgttctttctgcagctgcgcatgctcaggttattttctggttgggtctc 504
Query: 304 ttcgtcacagctgcgtgccactcttgttc-ttttgtttcttggttgggactctgcagagc 362
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 505 atcgtcacagctgcgtgccactcttgttccttttgtttcttggttaggactctgcagagc 564
Query: 363 tgaaacttcaggcacccttctagcttaatgtgcagtttgccccgtgcctgctgcagctgc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaaacttcaggcacccttctagcttaatgtgcagtttgccccgtgcctgctgcagctgc 624
Query: 423 cagtcaacacatgatgtcagtgggacaggactcaacacattcctttgtgaatccacaaag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtcaacacatgatgtcagtgggacaggactcaacacattcctttgtgaatccacaaag 684
Query: 483 ttgtggatcgactcctggctgagtactccctgac 516
||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtggatcgactcctggctgagtactccctgac 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 918
Length adjustment: 10
Effective length of query: 506
Effective length of database: 908
Effective search space: 459448
Effective search space used: 459448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_c19.g1 MSMg01no393_c19.g1 CHROMAT_FILE:
MSMg01no393_c19.g1 PHD_FILE: MSMg01no393_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:00 2005
(384 letters)
>mm_chr3_122271218_122272002
Length = 785
Score = 714 bits (369), Expect = 0.0
Identities = 381/385 (98%), Gaps = 1/385 (0%)
Strand = Plus / Minus
Query: 1 cctttgtatataaatgtaattatttttgtttgtttgttctgtttgtttgctgatggttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cctttgtatataaatgtaattatttttgtttgtttgttctgtttgtttgctgatggttat 526
Query: 61 aatcttcagcatctccaagaaggacgaaaagctcaacaataccttgacatgtgttggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aatcttcagcatctccaagaaggacgaaaagctcaacaataccttgacatgtgttggaaa 466
Query: 121 cagatggataatgtgagtaacagtgttttcatgtttaatgaaaaacgcacagacggactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cagatggataatgtgagtaacagtgttttcatgtttaatgaaaaacgcacagacggactt 406
Query: 181 agccctaagccccatgaagcgtcacatctgggtcccatgattctcagtgcattaggttta 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 405 agccctaagccccatgaagcgtcacatcttggtcccatgattctcagtgcattaggttta 346
Query: 241 gcagcagtgccattgcccaccaagccgtcccccgtcccccgacacctgctcctagaggct 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 345 gcagcagtgccattgcccaccaagccgtcccccgtccccccacacctgctcctggaggct 286
Query: 301 gtgtccaggtctcaatctgtgggctgtgtagtaggtgagctattattcataatctgccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtgtccaggtctcaatctgtgggctgtgtagtaggtgagctattattcataatctgccaa 226
Query: 361 -tttttttgttgtataataactaag 384
||||||||||||||||||||||||
Sbjct: 225 ttttttttgttgtataataactaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 785
Length adjustment: 9
Effective length of query: 375
Effective length of database: 776
Effective search space: 291000
Effective search space used: 291000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
