XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCTCT
CTCTTTCTCTCTCTGACCAGTTTTCTCTTTAAATCTGGAGCTCACTGATT
GACTAGATTGACCAGCAAGTTTGCTCCAGGGATCTGCATGAATAAATAAA
GAGAAGTTCTGGCTTCACCGCCCAACCCCAAGGTTGTAAGCATATGCTGC
ATGCCCACATTTTTACTTGGCTGCTGCGGATCTGAACTATGTTCAACAAA
GCATGCAAGCTTTTTAGCAATTAAAACATTTCTTTAGACACAAGCCTTAA
TGTTTGTTTTCTGAAACTATATTCACAACTAAGAGTTGTTTGTATAGTCT
GCCAGTATCTTTATATAATAATTAGTGTTAATTGCCAATAGGGCAAATTC
TAGAGTCATCTGAGAGAGGGACTTTTTGGTAGAGGAGTGGGGGGTTATTA
TCCTGTTTGGTATAATAGAATATGGGAATTCAAGGCCACTGTGGGTGGGT
CCTGATAACTTTAATTCGAGAAACAGTACTGAGTAGAATGCAGGCAGTCA
TCCATTGCTCTCCTTTCTGCCCAGCTGCCTCAAAATCCTGCTGCTGTAAC
TTAGCACTGATGGACTGTACCCTGAAACTGTGAGTTGAGATAAACCTTTG
TTCCCTTAAGTTATTTTGTCAAGAGTATTTTATCACACCAACAGAAAAAT
AACAACTCTTAAAAACCAAATCCCCTATGTTTGNATTTATATTCGCATTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCAAATAACCCCATTAAAAAATGGGAT
ACAGAGCTAAACAAAGAATTCTCAACCGAGGAATACCGAAGGGCTGAGGA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGATAAAGAGGAATACT
CCTCCATTGCTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCATTTCTTCAGAAAACTGGACATAGTACTACCAGAAGATCCAGCT
ATATCTCTTCTGGGCATATATCCAGAAAATGTTCCAACTGGTAAGAAGGA
CACAAGCTCCTCTATGTTCATAACAGCCCTGTTTATAGTAGCTAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGACTAGTGGATACAGAAAATGTAG
TAGATTTACACAATGCAGTACTGCTCAGTTATTAAAAACAATGAATTTAT
GAAATTCTTAGGCAAATGGAGGGATCTGGGAAATATCATCCTGAGTGAGG
AAACCAAAGCATAAAAGAACACACATGATATGCCCTCACTGATACGTGGA
TATTAGCCCAGAAGCTTGGAATACCCAAGATACAATTTGCAAAGCACATG
AA

Query= MSMg01no393_e01.b1 MSMg01no393_e01.b1 CHROMAT_FILE:
MSMg01no393_e01.b1 PHD_FILE: MSMg01no393_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:07 2005
         (606 letters)



>mm_chr3_45445011_45446016
          Length = 1006

 Score = 1116 bits (577), Expect = 0.0
 Identities = 589/593 (99%), Gaps = 1/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattctctctctttctctctctgac-cagttttctctttaaatctggagctcactgatt 73
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 214 gaattctctctctttctctctctgacacagttttctctttaaacctggagctcactgatt 273

                                                                       
Query: 74  gactagattgaccagcaagtttgctccagggatctgcatgaataaataaagagaagttct 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gactagattgaccagcaagtttgctccagggatctgcatgaataaataaagagaagttct 333

                                                                       
Query: 134 ggcttcaccgcccaaccccaaggttgtaagcatatgctgcatgcccacatttttacttgg 193
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 334 ggcttcaccgcccaaccccaaggttgtaagcatatgctgcaggcccacatttttacttgg 393

                                                                       
Query: 194 ctgctgcggatctgaactatgttcaacaaagcatgcaagctttttagcaattaaaacatt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgctgcggatctgaactatgttcaacaaagcatgcaagctttttagcaattaaaacatt 453

                                                                       
Query: 254 tctttagacacaagccttaatgtttgttttctgaaactatattcacaactaagagttgtt 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctttagacacaagccttaatgtttgttttctgaaactatattcacaactaagagttgtt 513

                                                                       
Query: 314 tgtatagtctgccagtatctttatataataattagtgttaattgccaatagggcaaattc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgtatagtctgccagtatctttatataataattagtgttaattgccaatagggcaaattc 573

                                                                       
Query: 374 tagagtcatctgagagagggactttttggtagaggagtggggggttattatcctgtttgg 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tagagtcatctgagagagggactttttggtagaggagtggggggttattatcctgtttgg 633

                                                                       
Query: 434 tataatagaatatgggaattcaaggccactgtgggtgggtcctgataactttaattcgag 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tataatagaatatgggaattcaaggccactgtgggtgggtcctgataactttaattcgag 693

                                                                       
Query: 494 aaacagtactgagtagaatgcaggcagtcatccattgctctcctttctgcccagctgcct 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaacagtactgagtagaatgcaggcagtcatccattgctctcctttctgcccagctgcct 753

                                                                
Query: 554 caaaatcctgctgctgtaacttagcactgatggactgtaccctgaaactgtga 606
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 caaaaccctgctgctgtaacttagcactgatggactgtaccctgaaactgtga 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)