BAC Information

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BAC

Clone NameMSMg01-393I06
Chromosome3 (Build37)
Map Location 11,461,563 - 11,461,947
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978
Downstream geneLOC667999, EG621965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393I06.T7 (MSMg01no393_i06.b1)MSMg01-393I06.TJ (MSMg01no393_i06.g1)
ACCAG494793AG494794
length1,494767
length of high quality
(start - end)		---525 (64 - 588)
definitionCHROMAT_FILE: MSMg01no393_i06.b1 PHD_FILE: MSMg01no393_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:28 2005CHROMAT_FILE: MSMg01no393_i06.g1 PHD_FILE: MSMg01no393_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTACTTTTCCTGTCTCCCTCTCCCCATATTATCATACTATTCAATA
CACACTATCCCTTGATTATATCTACTATTACACCCCCTCTTCTCCACACC
CCCACTCTACACCTCTTTACACTATACTTACCTACTAATATACCAANACA
CCCTCCTACACAATANACTCCCACACTACATATCTTCACATTACTCTACC
TCATTCTATATCCACCCTACTCTCTATTATCTACTACGCACACCTAACTA
TTACAACTACACACACCACTATCACTTACCATAATATCTATACACACTCA
TACTCTATCATCATCAATCAACACGAAACCGAACTCGCCAGTATATACCT
CATNTACCCTATCAAACTATATACGTTCTACAACGCAATCACGATATACG
TTCTATCTCTCGTCGATTACGATTTANCTTATATTCACACATACATATCA
TACACATTCATCTNATATTACTATCATACTTCACTTCTTCGTAATAACGC
CCACTCCACATATATCTCCCATCCTCACCAACAATAAATCATCTACACCT
ACACCACTAACCCTATNCTATATCTAACAGATACACATCTCGAATTAATA
CTATCACACATCCAACACTCACTCTCTAATATATACTACAATATATATAC
AACATACTCAATATATATTAACCGCTATCCGTNGCCTAGAATCATCATTA
TCGTCATCAACACCATATTATATTCACCACTACTCAACCAATATCTCTAT
CAATATCTCATCTACTCAATTTAATTCCNACATCTATCCAATTCAGATCC
CACATCATATAATATAATACTCATTCTATTATTCACTTCACTAATACCAT
AATACAATCACCAATATCATTATCATTTTTCATTCTCTATATATCTCTCC
TATTCTCCTATTCTTCTATTTCGCACTCATATAACATATCTTCTCAANAT
TATATATCACTCATANCATCTCTCTATGCCATTAACTATCGACTCTATCT
AACATACAATATCAACTCACAACGCCACTCACTCTATTCATATTATATAT
CTCTCCTCATCTCATTATACGCACACTATCATCTACATATACTATAACAC
AAATAGATTACACTACCTCAACACTATATCATATATATATATATCTACAC
ACATCTCTACTACTATATATTCATTATCACACATAATCTCTCTTCTCCAT
TCTCACGTCTCCCTATAATTCTCACATCACCTCCTCTCTGCTCACTCTTA
TATCACATATCNATCACTACACTCACACACCTATCAACCTCGCGGCTCTC
AATAACNCATATNTAAATACACCACACAATATATATACTCTCTACAGTGA
ACAATTCNATATACTAATCACACACATCACACAATTGATATATACTTATA
CACCGAATCNACACATCTATACTCTACTCTATCCACACACACTCANCACT
TATATCCACCAATATCACACCGTCCTCTATGCTTTATACACACN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACCTTGGTCTTCTACTCTAGTCAAATGAAGGAAAAGA
AAATCCATACAGAGTTCTATGTCCTAGAAACATACAAGAACTCTTACATC
ACATGTGAAAAAGTGACATATAAAAGAAATGAAGATGGGCTGAATGGGTA
AAATCCTTGAAAACCATGCAAAAAGACTTGTATTTTGTTTGTTTTCTTTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTC
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTTCTTTTCTTTTCTTTTCT
TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTCTTGAAACA
GGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTCTGCAGATCAG
ACTGTCCTCGAATTCATAAATCTGCCTGCCACTCCCTTCTGAGTGCTGGG
ATTAAAGGCGTGCACCACAACTGCCCAGGGAAAGCCTTGATTGGGAATTT
GGGTAAAATTAAGAATAGTGCAGTGCTAGAGACGCAGAAGAAGGCCTAAT
AAGCCATCATTGGGAAGAGAGGCCCTTAGGGTCTTGCAACTTTATCTGGC
CTAAAACGGAAGAATGCCGGGGGCCAAAAAAAAGAATGGGTGGGTATAGG
GAACATCTTCTGCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_i06.g1 MSMg01no393_i06.g1 CHROMAT_FILE:
MSMg01no393_i06.g1 PHD_FILE: MSMg01no393_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:28 2005
         (525 letters)



>mm_chr3_11461563_11462487
          Length = 925

 Score =  534 bits (276), Expect = e-156
 Identities = 382/472 (80%), Gaps = 87/472 (18%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttggtcttctactctagtcaaatgaaggaaaagaaaatccatacagagttctatgtc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 accttggtcttctactctagtcaaatgaaggaaaagaaaacccatacagagttctatgtc 326

                                                                       
Query: 61  ctagaaacatacaagaactcttacatcacatgtgaaaaagtgacatataaaagaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagaaacatacaagaactcttacatcacatgtgaaaaagtgacatataaaagaaatgaa 266

                                                                       
Query: 121 gatgggctgaatgggtaaaatccttgaaaaccatgcaaaaagacttgtattttgtttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgggctgaatgggtaaaatccttgaaaaccatgcaaaaagacttgtattttgtttgtt 206

                                                                       
Query: 181 ttctttttctttctttctttctttctttctttctttctttctttctttctttctttcttt 240
           |||||||||||||||||||||                                       
Sbjct: 205 ttctttttctttctttctttc--------------------------------------- 185

                                                                       
Query: 241 ctttctttctttctttctttctttctttctttctttctctctctctcccttccttccttc 300
                                 |||   ||| |||            |||||||||||||
Sbjct: 184 ----------------------ttc---cttcctt------------ccttccttccttc 162

                                                                       
Query: 301 cttccttccttccttcttttcttttcttttcttttcttttcttttcttttcttttctttt 360
           ||||||||||||||||         |  ||||||||||||||||||||||||||||||||
Sbjct: 161 cttccttccttccttc---------c--ttcttttcttttcttttcttttcttttctttt 113

                                                                       
Query: 361 cttttcttttctttttttcttgaaacagggtttctctgtatagtcctggctgtcctggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cttttcttttctttttttcttgaaacagggtttctctgtatagtcctggctgtcctggaa 53

                                                               
Query: 421 ctcactctgcagatcagactgtcctcgaattcataaatctgcctgccactcc 472
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ctcactctgtagatcagactgtcctcgaattcataaatctgcctgccactcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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