Query= MSMg01no393_p24.b1 MSMg01no393_p24.b1 CHROMAT_FILE:
MSMg01no393_p24.b1 PHD_FILE: MSMg01no393_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:13 2005
(456 letters)
>mm_chr3_39533702_39534557
Length = 856
Score = 828 bits (428), Expect = 0.0
Identities = 447/456 (98%), Gaps = 6/456 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactccattt---cctgacttattttaaactcaggacaatctgcccaccacaac 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggaattcactcc---tggccctgacttattttaaactcaggacaatctgcccaccacaac 701
Query: 61 atcccaagtgccacaattgaaaacatgggctgtcatgcctggcttaaaatctaatattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atcccaagtgccacaattgaaaacatgggctgtcatgcctggcttaaaatctaatattga 641
Query: 121 gaaaatatctgaaaagtaataatattaattttaaaacagaaactatgtctaggaatatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaaaatatctgaaaagtaataatattaattttaaaacagaaactatgtctaggaatatag 581
Query: 181 ttcaatggcagggagcttgcagactatataaacatgcctggattcagttcctagcaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttcaatggcagggagcttgcagactatataaacatgcctggattcagttcctagcaccat 521
Query: 241 aaaacaaagaaaaatgaacaaaaatgaaaatctggtgagtgtgtggagccttgttatgtg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 aaaacaaagaaaaatgaacaaaaatgaaaatctggtgagtgtgtggagccttgttatgcg 461
Query: 301 tgtgtaatgatagttgacgtgggcaggagcagggagctgccctgtaaaaggaactaaaac 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgtataatgatagttgacgtgggcaggagcagggagctgccctgtaaaaggaactaaaac 401
Query: 361 agaatcccacgtggcttgcttcttcctcataaggtaacactcggtaacatcttttttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agaatcccacgtggcttgcttcttcctcataaggtaacactcggtaacatcttttttaaa 341
Query: 421 ctaataattatggcttttcttcatgaactatgtaac 456
|||||||||||||||||||||||| |||||||||||
Sbjct: 340 ctaataattatggcttttcttcatcaactatgtaac 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_p24.g1 MSMg01no393_p24.g1 CHROMAT_FILE:
MSMg01no393_p24.g1 PHD_FILE: MSMg01no393_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:13 2005
(341 letters)
>mm_chr3_39366649_39367389
Length = 741
Score = 605 bits (313), Expect = e-177
Identities = 334/341 (97%)
Strand = Plus / Plus
Query: 1 tcttttcagcaaaagttcgattaagtgtatgttaaagtgccaatttgtacagcactgggg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcttttcagcaaaagttcgattaagtgtatgttaaagtgccaagccgtacagcactgggg 260
Query: 61 atagaatagatgcttaactcaggtctgccttctgagttgttaacaagtgtcggctctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 atagaatagatgcttaactcaggtctgccttctgagttgttaacaagtgtcagctctgtt 320
Query: 121 ttcatatgacacgcacggaaggtaaaaagcttcagttttatcttctgcataagaaacaaa 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatatgacacgcatggaaggtaaaaagcttcagttttatcttctgcataagaaacaaa 380
Query: 181 gccccaatgagggaaagccttgatgttgtccatagatggtccttgttaggaagatgcact 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gccccaatgagggaaagccttgatgttgtccatacatggtccttgttaggaagatgcact 440
Query: 241 tcacagaaagaagttagatgagccatggacgatcttgcaaacctgctgtagcatgatctt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacagaaagaagttagatgggccatggacgatcttgcaaacctgctgtagcatgatctt 500
Query: 301 acatgctgtgaaacagcagtggatagcaagagaaaactgtc 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgctgtgaaacagcagtggatagcaagagaaaactgtc 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
