NNNNCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGAGCAATAATAGGCTGAAGAAGAATATCAAGAGGGT
TACAAACAATGACATTGATATAAATGGGAATGAGCACACACATACCAAGC
TTTGCAGGATGCAGCTAAACTTGTACTAAGAGGGGAAGTTCTTGAAATGA
GCAAATAAACTACCTGATGTTGTATCTCAACAGTCTAGGAAAGGAGAAAA
TTAAGCTCCAAATACAAATTAAATAAGAAAGAACTGAGCAAAAATTAAAT
GTAATTGAGTTTATGAAATAATGAAAACATTACTAAAACTGTTTTAAATA
CAAATTGGCACATCTTTGCAATGGCAAAGAACAATGAAAATGAACTCAAA
TGAAACCAGAAATAGAAGAGGAAGCAACATAATTGATACAGAAGAGATAC
ATAAAAAATTAGTGGGAATCTACCACCAAACTGTATTCAAGATAATCACA
TAGCCAAACAGAAATTAAAAACCCTCTAAAAACACAGAAGCCACAAAGAC
TGAGTTGTAAAGGAATCTGAGAAGGACGAGAAAATAGAATCACCAGTGAG
CAGTCTCTTCCTAGGATAATTCCATGACCCGTTACCTTCACAGCTAATTA
CATTAACACTTGCCTTTTCTCAATTAATGCCAGACACTGAAGTTGAGAGG
ATGTTTCCAAACATGCTTTACACAGTTCCCACTACTGTGATACCAAN

CCCCTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAAAATTTTCTA
AGCAGGAAGATTTGCAGGCTTGCACTGAAGATGCAGCTGTACCTGATAAG
AGAGACCAGCACTGTTGTAAAGACATTTCCTACACATCACTGGGACAATA
GGAGAAGGATTTCTTCTGGATCAGCACACAGACCTGACATTGCTGTGGTT
CAAGGGAGCTGGGCTATATTTTCAGTTGGCTGTAGAGCATGGCAGGGTTC
CAAATATCTAAGCTGTAATGGTTTTAGAGGCATGAAAGATTCAAGATGGA
GGTGGTCATGGAGAGGAGACCTGCTGAGGCCGGGGAGGATCAGAGTTCCT
GTGGAAATGTCCAGAAGGGCCATTTTGAAAAACTGGAAGGTGAAACCCCA
TTTGCTATGGAGATAATCTAATATCAGAAATGTCAAGGCAGTGAGAAATT
TTCGAAGGAAAGCTGCAGCTGCGGGGTGGAATTTGCTCAAGTTTACCAGG
GAATCTGTGTGCGCAGTAGGTGGCCTAGCTCTATAGGAGGCCTATCTATA
CCCTTTGGCGCTTAACAGATGGCATCAAGACACCCACATCTACCTTCCCG
ACGTCCTCCTCTGCTTCTAACCCGGCTAAAACCTTGTTCTTGCCATACCC
CACCTTTACTTGCTTTGTCTGTCCCGTCTCTTCCTTGCCTCCCTTTCCTT
TTTTACAA

Query= MSMg01no394_a03.b1 MSMg01no394_a03.b1 CHROMAT_FILE:
MSMg01no394_a03.b1 PHD_FILE: MSMg01no394_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:13 2005
         (580 letters)



>mm_chr3_123717254_123718233
          Length = 980

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%), Gaps = 1/577 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgagc-aataataggctgaagaagaatatcaagagggttacaaacaatgacat 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gaattcttgagcaaataataggctgaagaagaatatcaagagggttacaaacaatgacat 856

                                                                       
Query: 64  tgatataaatgggaatgagcacacacataccaagctttgcaggatgcagctaaacttgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgatataaatgggaatgagcacacacataccaagctttgcaggatgcagctaaacttgta 796

                                                                       
Query: 124 ctaagaggggaagttcttgaaatgagcaaataaactacctgatgttgtatctcaacagtc 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttaagaggggaagttcttgaaatgagcaaataaactacctgatgttgtatctcaacagtc 736

                                                                       
Query: 184 taggaaaggagaaaattaagctccaaatacaaattaaataagaaagaactgagcaaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taggaaaggagaaaattaagctccaaatacaaattaaataagaaagaactgagcaaaaat 676

                                                                       
Query: 244 taaatgtaattgagtttatgaaataatgaaaacattactaaaactgttttaaatacaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 taaatgtaattgagtttatgaaataatgaaaacattactaaaactgttttaaatacaaat 616

                                                                       
Query: 304 tggcacatctttgcaatggcaaagaacaatgaaaatgaactcaaatgaaaccagaaatag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tggcacatctttgcaatggcaaagaacaatgaaaatgaactcaaatgaaaccagaaatag 556

                                                                       
Query: 364 aagaggaagcaacataattgatacagaagagatacataaaaaattagtgggaatctacca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagaggaagcaacataattgatacagaagagatacataaaaaattagtgggaatctacca 496

                                                                       
Query: 424 ccaaactgtattcaagataatcacatagccaaacagaaattaaaaaccctctaaaaacac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccaaactgtattcaagataatcacatagccaaacagaaattaaaaaccctctaaaaacac 436

                                                                       
Query: 484 agaagccacaaagactgagttgtaaaggaatctgagaaggacgagaaaatagaatcacca 543
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ataagccacaaagactgagttgtaaaggaatctgagaaggacgagaaaatagaatcacca 376

                                                
Query: 544 gtgagcagtctcttcctaggataattccatgacccgt 580
           |||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgagcagtctcttcctaggataattccatgacccgt 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)