Query= MSMg01no394_b17.b1 MSMg01no394_b17.b1 CHROMAT_FILE:
MSMg01no394_b17.b1 PHD_FILE: MSMg01no394_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:22 2005
(479 letters)
>mm_chr3_43676379_43677260
Length = 882
Score = 847 bits (438), Expect = 0.0
Identities = 464/474 (97%), Gaps = 6/474 (1%)
Strand = Plus / Minus
Query: 10 cacacacttacacacacataaacacacacacacacacacaca-caccaccaccaccacca 68
||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct: 706 cacacac--acacacacacacacacacacacacacacacacaccaccaccaccaccacca 649
Query: 69 ccaccaccaccaccatcaccaccaccaccacgactaccactactaccactagcaaaacta 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccaccaccaccaccatcaccaccaccaccacgactaccactactaccactagcaaaacta 589
Query: 129 ataaatatcccattaatttttctgatgctcttgaacatattcatatttgtaattcagaat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ataaatatcccattaatttttctgatgctcttgaacatattcatatttgtaattcagaat 529
Query: 189 gttcctcatgaacatgcttttgcagaattccattttccttctgctttccttgacatgaat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttcctcatgaacatgcttttgcagaattccattttccttctgctttccttgacatgaat 469
Query: 249 tacctgtgatgtacatgcattttctgtttgataaactaatattttttt-cagaatcgttt 307
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 468 tacctgtgatgtacatgcattttctgtttgataaactaattttttttttcagaatcgttt 409
Query: 308 cagtattatacatttagtgttacttctttcacataaagtgaatactcatttttttt--gt 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 cagtattatacatttagtgttacttctttcacataaagtgaatactcattttttttttgt 349
Query: 366 gacactggatatttcttctatttttgaagttaataacttttattcatatgatgtaaatgt 425
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggcactggatatttcttctatttttgaagttaataacttttattcatatgatgtaaatgt 289
Query: 426 ctcagaggcttgctgctgaataaacttactctttctagttctttctgaactctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctcagaggcttgctgctgaataaacttactctttctagttctttctgaactctg 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 882
Length adjustment: 10
Effective length of query: 469
Effective length of database: 872
Effective search space: 408968
Effective search space used: 408968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_b17.g1 MSMg01no394_b17.g1 CHROMAT_FILE:
MSMg01no394_b17.g1 PHD_FILE: MSMg01no394_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:22 2005
(441 letters)
>mm_chr3_43550945_43551787
Length = 843
Score = 845 bits (437), Expect = 0.0
Identities = 441/443 (99%), Gaps = 2/443 (0%)
Strand = Plus / Plus
Query: 1 cataaacagagaagtagaccacttctaagaaatagcttaaataggttaaataattttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaacagagaagtagaccacttctaagaaatagcttaaataggttaaataattttata 260
Query: 61 tatgttgtttttgacaggctcttgatttggagtgtaaagtatattgctacaatataaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgttgtttttgacaggctcttgatttggagtgtaaagtatattgctacaatataaata 320
Query: 121 aactaaaatcattaatacactatgtctgaaaatataaatatatttacataagcctataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaaaatcattaatacactatgtctgaaaatataaatatatttacataagcctataaa 380
Query: 181 ctttttgaaactgaaagaaatgtcatgggtttcagagagagagagagag--ctcacagta 238
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctttttgaaactgaaagaaatgtcatgggtttcagagagagagagagagagctcacagta 440
Query: 239 ggaaaaaatggaagcaagactaaggagatggaatgagtgcaaacgaggtacatattgaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaaaatggaagcaagactaaggagatggaatgagtgcaaacgaggtacatattgaca 500
Query: 299 tgaaatacaagagaagactgcaaaagtagaagaaaagtaatgttgaagacatctataagc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaatacaagagaagactgcaaaagtagaagaaaagtaatgttgaagacatctataagc 560
Query: 359 taatggtcaccatttaaagagagaaactcactgaatggactgtgaggattgacaatttgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatggtcaccatttaaagagagaaactcactgaatggactgtgaggattgacaatttgg 620
Query: 419 atagaaaatattattggattttt 441
|||||||||||||||||||||||
Sbjct: 621 atagaaaatattattggattttt 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 843
Length adjustment: 9
Effective length of query: 432
Effective length of database: 834
Effective search space: 360288
Effective search space used: 360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
