BAC Information

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BAC

Clone NameMSMg01-394E02
Chromosome3 (Build37)
Map Location 80,977,926 - 80,978,355
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394E02.T7 (MSMg01no394_e02.b1)MSMg01-394E02.TJ (MSMg01no394_e02.g1)
ACCAG495355AG495356
length724740
length of high quality
(start - end)
430 (77 - 506)452 (87 - 538)
definitionCHROMAT_FILE: MSMg01no394_e02.b1 PHD_FILE: MSMg01no394_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:34 2005CHROMAT_FILE: MSMg01no394_e02.g1 PHD_FILE: MSMg01no394_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTTCGTCAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACAAATTTTCATTAATTTAGAAAAGCATAGTACCA
AAAGAATACTGAGACTACTGCTAATACTTATCAAGTAAGAGCCTTCTACC
AGCTATCTTTTCGATGTTGGGAATAGCTGACAACATGCATTTGGATATTA
GCTTATGTATTTTCTCATAAATCACTTTGCTATTATTCCAGCTCTTTCTT
GCTTCCTAGGGTGGACATTGTGTCTAACACATGCTGAGTAACTGCTCCAC
TACTGAAGAAAACATCCCCAGCTTTACCTAATGCACAACTATTTTCTTTA
ACAACTGCACTTATAAATAAATGATAGTTTCTCTGGATTGAATTTCAAAA
TAATAAAAAGAAAATTACAAAACTTTTAGTGGGAGAGAAGTCTGACATGT
TCAAACCGTTATTGATAGATTTTAAAATATAATGGAATATAAATACACTA
GACAAAAATCAAAACCAACGTTTTATATAGTATTAGGATTTAAAGACAAA
TTTGTTAATAAAAAACAATACATAGACTGAGTATAGTTTTGAATCTTCCC
CTAAGGAATGTAACAATATTTGCCAGCTTCATTTTTCTCGACCAAATTAA
CATACTAAGATCCTTTAAAATGGTACTAGACACTCAGTGCGGAACAATTC
CTGGCCCAGAGCTACCACTCGAAG
TCTCCTTTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGCACACAGGG
AAACAGAAACCACAGTCCATAGGTCCTATGGAGAATAGCTTCACACAGGA
CAACAGCTTGACTGCTCTGAAGACTCAACAGTCTTAAGGCATCCCAGAAG
ATCTGCTGCAGCCAATGAAACAGATCAACCACTTCTCTGCCCCTCTGAAA
ACCCCACAGTTGGAAGGCCCCACAGGAGGTCTGATACAGCCAGGGCTGCA
GGACTACCAGGAGACCTGAAGCAACCCAGGACAAAAAAGTCAGACTCCAG
ACAGTCACCCAGACCAGCAAACACCAGGGCTAGCCAAACGGCAAAAGGCA
AGCACAAGACTATAAGCAACAGAAGCCAATATATGTGGGCATCATTGGTA
CCCAGTTCTCCCACCACAGCAAACCCTAAATACGCCAACACACCAGAAAG
CCAACCTAAAGTTCTATCTCATGAAGATAATAGAGTCCTTTAGGGAGGAT
ATAAATAACTGAAAGAAATATAGGAAAATGCCGGTAAACAAATAGAAACT
CTTAAAGGAGCAACTAAACAAACCCCCTTTAAAAAATCCAGGAAAAACAG
CCCCAACGGTGAACGGAGTTGAATAAAGGGGGTTCAAAATCTGAAAAACG
CGAAGTGAAAAGTCCTAACGGCAAACCTCCCGTTGGACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_e02.b1 MSMg01no394_e02.b1 CHROMAT_FILE:
MSMg01no394_e02.b1 PHD_FILE: MSMg01no394_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:34 2005
         (430 letters)



>mm_chr3_80977726_80978555
          Length = 830

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%), Gaps = 2/431 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatttagaaaagcatagtaccaaaagaatactgagactactgctaatacttatcaagt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 630 ttaatttagaaaagcatagtaccaaaagaatactgagaccactgctaatacttatcaagt 571

                                                                       
Query: 61  aag-agccttctaccagctatcttttcgatgttgggaatagctgacaacatgcatttgga 119
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 -agaagccttctaccagctatcttttcgatgttgggaatagctgacaacatgcatttgga 512

                                                                       
Query: 120 tattagcttatgtattttctcataaatcactttgctattattccagctctttcttgcttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 511 tattagcttatgtattttctcataaatcactttgctattattccagctcgttcttgcttc 452

                                                                       
Query: 180 ctagggtggacattgtgtctaacacatgctgagtaactgctccactactgaagaaaacat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctagggtggacattgtgtctaacacatgctgagtaactgctccactactgaagaaaacat 392

                                                                       
Query: 240 ccccagctttacctaatgcacaactattttctttaacaactgcacttataaataaatgat 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccccagctttacctaacgcacaactattttctttaacaactgcacttataaataaatgat 332

                                                                       
Query: 300 agtttctctggattgaatttcaaaataataaaaagaaaattacaaaacttttagtgggag 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 331 agtttctctggattgaatttcaaaataataaaaagaaaattacaaaacttttagtgagag 272

                                                                       
Query: 360 agaagtctgacatgttcaaaccgttattgatagattttaaaatataatggaatataaata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agaagtctgacatgttcaaaccgttattgatagattttaaaatataatggaatataaata 212

                      
Query: 420 cactagacaaa 430
           |||||||||||
Sbjct: 211 cactagacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)