Query= MSMg01no394_h08.b1 MSMg01no394_h08.b1 CHROMAT_FILE:
MSMg01no394_h08.b1 PHD_FILE: MSMg01no394_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:51 2005
(394 letters)
>mm_chr3_64275204_64275997
Length = 794
Score = 669 bits (346), Expect = 0.0
Identities = 380/396 (95%), Gaps = 10/396 (2%)
Strand = Plus / Minus
Query: 5 gaattctccttattcagtggtactgaggacaaagcttcatcaaaatctctgacaatgaaa 64
|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 403 gaattctccttactgagtggtactgaggacaaagcttcatcaaaacctctgacaatgaaa 344
Query: 65 ggattctgaaataaaatcagaagacatattcaaaccacaacacaaaacctatgagatggt 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggcttctgaaataaaatcagaagacatattcaaaccacaacacaaaacctatgagatggt 284
Query: 125 tctctggggagtggtatggaatgctgatttccaggctcaaagtagctaattagacccttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tctctggggagtggtatggaatgctgatttccaggctcaaagtagctaattagacccttt 224
Query: 185 aattcacatattatttgca------ctctctctctctctctctctctctatatatatata 238
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 223 aattcacatattatttgcactctctctctctctctctctctctctctctctatatatata 164
Query: 239 tatatatatatatatatatatatatatatatgcaatatatattgtcaccccctataatga 298
|||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 163 tatatatatatatatatatatatatatata---aata-aaattgtcaccccctataatga 108
Query: 299 aaaggaaagaggatcatggatcatgaaaccccagtccctcccagagaggtatatactgtt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aaaggaaagaggatcatggatcatgaaaccccagtccctcccagagaggtatatactgtt 48
Query: 359 ggtggttggtaggggagtagggaaaagaggcatagt 394
||||||||||||||||||||||||||||||||||||
Sbjct: 47 ggtggttggtaggggagtagggaaaagaggcatagt 12
Score = 78.1 bits (40), Expect = 1e-18
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 227 tatatatatatatatatatatatatatatatatatatata 266
||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tatatatatatatatatatatatatatatatatatatata 173
Score = 78.1 bits (40), Expect = 1e-18
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 229 tatatatatatatatatatatatatatatatatatatata 268
||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tatatatatatatatatatatatatatatatatatatata 173
Score = 76.1 bits (39), Expect = 4e-18
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 231 tatatatatatatatatatatatatatatatatatatat 269
|||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tatatatatatatatatatatatatatatatatatatat 172
Score = 68.4 bits (35), Expect = 8e-16
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 237 tatatatatatatatatatatatatatatatatgcaatatata 279
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 134 tatatatatatatatatatatatatatatatat---atatata 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 7
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_h08.g1 MSMg01no394_h08.g1 CHROMAT_FILE:
MSMg01no394_h08.g1 PHD_FILE: MSMg01no394_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:51 2005
(417 letters)
>mm_chr3_64224071_64224887
Length = 817
Score = 806 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Plus
Query: 1 tgagaagacagagcatcatatctgccatggtgaactcatactggaccacagactttggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaagacagagcatcatatctgccatggtgaactcatactggaccacagactttggtc 260
Query: 61 agccacagcttatcagacattccatgcacatcacatttcccagaatagttgttcaggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccacagcttatcagacattccatgcacatcacatttcccagaatagttgttcaggttt 320
Query: 121 ttgaccagtttgaatctcagttaatgatgcaacaccaggtaattcttgtaccatgacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaccagtttgaatctcagttaatgatgcaacaccaggtaattcttgtaccatgacagt 380
Query: 181 acacgcatggacatagtaatcattaccttgtttcctaaggagaactctctgaatcaatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacgcatggacatagtaatcattaccttgtttcctaaggagaactctctgaatcaatag 440
Query: 241 ggaaatcaacaatacacttagtttcacatttcctaggtgttctttttattaaggaagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaatcaacaatacacttagtttcacatttcctaggtgttctttttattaaggaagatg 500
Query: 301 ttgaggtcaggttatctcatggtctatgtcattccatgttgtgtacaacaatgttctttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaggtcaggttatctcatggtctatgtcattccatgttgtgtacaacaatgttctttc 560
Query: 361 agagttttcgttgccccatgatacttcttattggaagcagattttcattttatttgg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagttttcgttgccccatgatacttcttattggaagcagattttcattttatttgg 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
