BAC Information

Click to search

BAC

Clone NameMSMg01-394I04
Chromosome3 (Build37)
Map Location 144,749,598 - 144,750,121
singlet/doubletsinglet
Overlap geneClca5
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3
Downstream geneOdf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394I04.T7 (MSMg01no394_i04.b1)MSMg01-394I04.TJ (MSMg01no394_i04.g1)
ACCAG495550AG495551
length740744
length of high quality
(start - end)
530 (51 - 580)476 (84 - 559)
definitionCHROMAT_FILE: MSMg01no394_i04.b1 PHD_FILE: MSMg01no394_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:55 2005CHROMAT_FILE: MSMg01no394_i04.g1 PHD_FILE: MSMg01no394_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAACACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGA
TCCGCGGAATTCTTCCTCTTTCCCTCCCTTTCAGGCCCATCAAAAAAGCA
CCTAGTGGATGAGTTGGTAGCATTATCGCAATGCTTGATTAGTGCCTGCC
ACATTTATATTGCAGGTAATCCTTAGAGTAACTATAAAAACCAATAAAGA
TATTATTATGCTCACTCCATAGACAAAGTGTTCAGCCTCCAATGGCCACC
ACGGCAGAGGACGGACACGGGTGCTGGCAACTGCCACACCTCTATCATCA
GATCCCTTTATAATGTCTCCTCCCACTCGGATTGAATTTTTAAAAATTCA
GTAATGTACCTATTTTCAAGTGACACCACCGGTTGTTAAATTCTGAGTTG
GAGTGAAGGGTGAGAATCTGTCACCTCCACTGTGAATAGCGCACAACTGC
TCAGCGCTCTTTCTTCTGCACGCCCAACACACATTTCTGAGCATATAACT
AATTAATTGAAAAATATTCTAGAACTATGCCACTCTTTACAACTCGTAGA
ACTGTACAGTGTCTACAAGAAAATTAACAGATTTTTTTTTGCAAGCTGAA
TTACTTCACTGCCATTGGCCTACCAATCAAATATCATTTCCTCCTTTTCT
TCACTCCCTCTCTCTCTCTCTCCTCTTTCTTTCGGGGACCCGAGGGAGAA
AGACTGCTTCCACTCCTACCAGTTGGCGCACTGTACTTGA
NNNNNTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACTAAACCCATTTG
GTCCTTGGCTTTTTTTTTGGTTGGGTGACTTTTAATGACTGCTTCTATTT
CTTTAGGGGTTATAGGACTGTGTAGATGGTTTATCTGATCCTGATTTAAC
TTTGGTATTTGGTATCTGTCTAGAAAATTGTCCATTTCATCCAGATTTTC
CAGTTTTGTTAAATATAGTCTTTTGTAGTAGGATCTGGTGTTTTTTTAAT
TTCCTCAGTTTCTGTTGTTTTATCTCCCTTTTCATTTCTGATTTTGTTAA
TTTGAATAGTATCTGTGTGCCCTCTGCTTAGTCTGGCTAAGGGTTTATCT
ATCTTGTTGATTTTCTCAAAGAACCAGGTCCTGGTTTTGTTGATTCTTTG
CATAGTTCTTTTTTGTTTCTACTTGGTTGATTTCAGCCCTGAATTTGCTT
ATTTCCTGTAGTCTACTCCTCTTGGGTATACTTACTTCTTTTAGTTTCAG
AGCTTTCAGGTGTGCTGTTAAACTGCTAGTGCATGTTCTCTCCAGTTTCT
TTGGAGACATACTCAGAGCTGAGTTTTCCTTTTTACCATGCTTTTCATTG
CGTCTCATAAACTTTGGGTATGCTGTGCCGTTCCTTTTCATTAAATCTTA
AGAAGCCCTTAACTTCCTTTCTTTACTCTCTCCCTCCGACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_i04.b1 MSMg01no394_i04.b1 CHROMAT_FILE:
MSMg01no394_i04.b1 PHD_FILE: MSMg01no394_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:55 2005
         (530 letters)



>mm_chr3_144749392_144750321
          Length = 930

 Score =  920 bits (476), Expect = 0.0
 Identities = 512/524 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttcctctttccctccctttcaggcccatcaaaaaagcacctagtggatgagttg 66
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 730 gaattcttcctccttccctccctttcaggcctatcaaaaaagcacctagtggatgagttg 671

                                                                       
Query: 67  gtagcattatcgcaatgcttgattagtgcctgccacatttatattgcaggtaatccttag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtagcattatcgcaatgcttgattagtgcctgccacatttatattgcaggtaatccttag 611

                                                                       
Query: 127 agtaactataaaaaccaataaagatattattatgctcactccatagacaaagtgttcagc 186
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 610 agtaactataaaaaccaataaagatattattatactcactccatagacaaagtgttcagc 551

                                                                       
Query: 187 ctccaatggccaccacggcagaggacggacacgggtgctggcaactgccacacctctatc 246
           ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 550 ctccaatggccaccatggcagaggacgaacacaggtgctggcaactgccacacctctatc 491

                                                                       
Query: 247 atcagatccctttataatgtctcctcccactcggattgaatttttaaaaattcagtaatg 306
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 490 atcagatccctttataatgtctcctcccactcggactgaatttttaaaaattcagttatg 431

                                                                       
Query: 307 tacctattttcaagtgacaccaccggttgttaaattctgagttggagtgaagggtgagaa 366
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 430 tacctattttcaagtgacaccacaggttgttaaattctgagttggagtgaagggtgagaa 371

                                                                       
Query: 367 tctgtcacctccactgtgaatagcgcacaactgctcagcgctctttcttctgcacgccca 426
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctgtcacctccactgtgaatagtgcacaactgctcagcgctctttcttctgcacgccca 311

                                                                       
Query: 427 acacacatttctgagcatataactaattaattgaaaaatattctagaactatgccactct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acacacatttctgagcatataactaattaattgaaaaatattctagaactatgccactct 251

                                                       
Query: 487 ttacaactcgtagaactgtacagtgtctacaagaaaattaacag 530
           |||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 250 ttacaactcaaagaactgtacagtgtctacaagaaaattaacag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)