BAC Information

Click to search

BAC

Clone NameMSMg01-394J21
Chromosome3 (Build37)
Map Location 50,137,526 - 50,137,799
singlet/doubletsinglet
Overlap genenone
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
Downstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394J21.T7 (MSMg01no394_j21.b1)MSMg01-394J21.TJ (MSMg01no394_j21.g1)
ACCAG495631AG495632
length863781
length of high quality
(start - end)
277 (49 - 325)370 (81 - 450)
definitionCHROMAT_FILE: MSMg01no394_j21.b1 PHD_FILE: MSMg01no394_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:03 2005CHROMAT_FILE: MSMg01no394_j21.g1 PHD_FILE: MSMg01no394_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTACCACTTTCCTCCATTATTAAAGGTGACCATTCATCCTT
GGTAATCAGATCAATTTCTGCTGAGAATTTAACTCCATATGTGTGAATTG
GAAGTGATTTTATTAGTGTTCTACTACATCAAGTTTGATAAAATCCCCAA
TCCATTTCAGTTAAGTTTCTATTGATCCACTTAAGAGATCAATTTGGAGT
TGTTCGATTCTTTTGTCAAGAGATTTCATCTGGCTTGAGTTTTAACGTTA
TGAGATAAATGTGATAAGGTAAGGGAGATATTTTTAGGAGTTCAGATGAG
TGTTGACCACTGTTTGAATGCCTTCGTCCTGCCCGTTACCCGTTACTTTC
CCCTCCCCCTTTCTTCATTTGTCCCCCCCACCCCCCCTCAATTCTAGACC
TTTTCTTCCTCCCCCTTTTCCCTCTTTTACTTCTCTTCTCTTCTTCCTTC
TCTTTCCCCCTCCGTTTTTTTCTTCTCTCTTCTCCTCTTTCTTCCCTTTT
TTTCTTCTGCCCCCCTCCCCTTCTCTTCCTTCCCCTTCCCCTTCCCCTAC
TTTCTCTTCCCTTTTCTCTCTCTTCTCCTTTCCCTCTATCCTTTTCTTCT
TCGTCTTTCTCCTCTTTCTTTTCCCTCTTCTTTCTCCTTTTCCCCTCTTT
TTTCCATTCTCTACCCCCGCATCCCTTTAATTGCTTCCACTTCTTACACT
TTCTTATCCCTCCCGTTCTCCCCCCTTTTTCGCTTCCTCTCTCTTTAACT
ATCGCATTTACCTTTTTTCTCACCCCCCTCTTCTTCATCCTCCCCATTTT
TTCCTTCTCCCCC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATTTAAAAAGCCTGGTGT
GATGGTGTGTGATGGTAATCACAATGCAGGGGACATGAAGACATGCATAT
TCCTGGTGTTCATTGGACATCCAGGATCGTTAAATTGGCAGATCCAGCCC
AGTAACAGAAACAAAAAACAAAACAAACAAACAAACAAACAAAACACAAG
GTTTGTGACATCCTGAGGAAAGACATTAGAGGTGCATTTGACCAACAAAT
GCACAGGAGAACACACACACTTAAATAAGATAAATAGATTATAGATAGAT
TGATAATAGAAAGGAGATAGATACATAGATAATTATAGATGGATATAGAC
AATTCAAATAAGATAAATTATAGATAAGCGATGGATGATAGAGATAGGTG
NNTNNTTTNNNTTTNTTTTTNTTTNNNTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTATTTTTTTTNTTTATTTTAACTCCATACTCCATTTCCCTTTTAAC
CATTTTTCCTTATCCCCCTTACCTTCACTTCCTCATTTCCTAAAACTTTT
CTATTTTCCAAAAACCCCCCCTTTTCCCCTCCATTTCTTTTCCCTTCCCT
TTCTCCCATCCCTTCCTCCCCTCTATTCTCCTCCTTTACCCCATTTATCN
CTCCTCCTTCAAACCCTATTTTTTCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_j21.b1 MSMg01no394_j21.b1 CHROMAT_FILE:
MSMg01no394_j21.b1 PHD_FILE: MSMg01no394_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:03 2005
         (277 letters)



>mm_chr3_50137323_50137999
          Length = 677

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaccactttcctccattattaaaggtgaccattcatccttggtaatcagat 63
           ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaattctttaccaccttaatccattattaaaggtgaccattcatccttggtaatcagat 418

                                                                       
Query: 64  caatttctgctgagaatttaactccatatgtgtgaattggaagtgattttattagtgttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caatttctgctgagaatttaactccatatgtgtgaattggaagtgattttattagtgttc 358

                                                                       
Query: 124 tactacatcaagtttgataaaatccccaatccatttcagttaagtttctattgatccact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tactacatcaagtttgataaaatccccaatccatttcagttaagtttctattgatccact 298

                                                                       
Query: 184 taagagatcaatttggagttgttcgattcttttgtcaagagatttcatctggcttgagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taagagatcaatttggagttgttcgattcttttgtcaagagatttcatctggcttgagtt 238

                                             
Query: 244 ttaacgttatgagataaatgtgataaggtaaggg 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 ttaacgttatgagataaatgtgataaggtaaggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)