AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTGTACGCGCTTAAAAGGGAAAATTGTAGAAAAAGTTGTTTCAT
AGCCAATCCACATTTTACTGCCCAAAGATTAGATTTTTCTTTAATTTTTA
TGTTTTTGGTAAATTTCTGTTATCTTAGTAACAAGCGCTACAGAACAAAA
TATAATACTATTATCAAGTATAATTTTTATCACCATATGCTTGTTTTTAA
AATTCTTTCACCCCTTTGAAGTGTGAACTTTTAAAAAACTATTTGCCAAC
ATTTTATATGTATACCATGTATTGTAATCATACTCACTCGCCGTCAGCAT
CTCTTTTTCCCTCCATCCCTGCTGACCTGGCTCTTCCTAGCCAGTCCCTA
TCCTGCTCTCAAGCCTTATGTATGCAGGAATCCAAAGGCCGTGTCATGTC
TAGCAGGCGATAGATTCTATTTTGTGTTTTTGAAGTGTTGCATATACAGT
TTAATATGAGAACGAATGCTTGTCTTTCAACAGGCAGAANAGAGGAAGTC
ACTCTGTAAAAAATTGNCGTGTGTGTGTGTGTGTGTGTGTGTTTTNTNTT
TTTTTTTNTTTNNTNNNNTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTNN
NNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTCCCCNNCTCCCTTCTTTTTTTTTTTTCCTTTCTTTTC
CTCCCCTTTTTTCTCCTTTTCTTTCTCCCC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGCCTCTTTTTCTTTAGTTATTATT
TTGCAAACACATACACACAAAGAAATACATAAAAAATACAACCTGCTGAG
CTCATTTAGTGTTGCTAGAGGATGTGTATGTTTTTAGGGCTCATATCCTA
ACCAATTAGGGGGCTCATCCGTGATGAAGACTAACTTACCCTTTCTCAGC
AGTTGTTATTGCCAGTAATAGCAGAGAATCCAGGAGTCTACTGCAAGGTT
GCATCTTCTAGATATGAGAGGGAAGGTACACCAAGGAAATCTCAACAATA
GGGCTGCCTAACAGACCTGAAAAATGACAGCGCTAACTGGCATGCTAATG
TGGATGCAGGAAATCTCAGGAGGCCAACATGCAGTTTTGTTGGATGCAGG
GGTGTAGCTAATGTGGATGCAGGGGTGTAGCTTGTGGTGNAGTGTGTGCT
TTGNNCGATTCATGTCCCTGTGTTCCTTCCCTAAGACTAGGAAGAGATTA
TAATGCTGAGAACCCGGTATAGCAACAATAGTTCACGAACTTTACCTTTT
TTTTAGTTTACTGACGCTCTTTTGTGCTTGTTTCTGCTACCCCCCCCTTT
TTGCTCTTTTTTTATTCCCTTTTTTCTCTCAAAAATATTTTCCTGTTTTC
CTTCGCCCCCTTGATTTCCCTTCCTTTTAACCCCTTCCTCTCTGTATTCT
TTTATTACCCTTTCTTACTG

Query= MSMg01no395_b19.b1 MSMg01no395_b19.b1 CHROMAT_FILE:
MSMg01no395_b19.b1 PHD_FILE: MSMg01no395_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:50 2005
         (517 letters)



>mm_chr3_86121039_86121955
          Length = 917

 Score =  893 bits (462), Expect = 0.0
 Identities = 497/519 (95%), Gaps = 17/519 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgtacgcgcttaaaagggaaaattgtagaaaaagttgtttcatagccaat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctttctgtaagcgcttaaaagggaaaattgtagaaaaagttgtttcatagccaat 256

                                                                       
Query: 65  cc--------acattttactgcccaaagattagatttttctttaatttttatgtttttgg 116
           ||        ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccacataataacattttaccgcccaaagattagatttttctttaatttttatgtttttgg 316

                                                                       
Query: 117 taaatttctgttatcttagtaacaagcgctacagaacaaaatataatactattatcaagt 176
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 317 taaatttctgttatcttagtaataagcgctacagaacaaaatataatactattatcaagt 376

                                                                       
Query: 177 ataatttttatcaccatatgcttgtttttaaaattctttcacccctttgaagtgtgaact 236
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ataatttttatcaccatatacttgtttttaaaattctttcacccctttgaagtgtgaact 436

                                                                       
Query: 237 tttaaaaaactatttgccaacattttatatgtataccatgtattgtaatcatactcactc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttaaaaaactatttgccaacattttatatgtataccatgtattgtaatcatactcactc 496

                                                                       
Query: 297 gccgtcagcatctctttttccctccatccctgctgacctggctcttcctagccagtccct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gccgtcagcatctctttttccctccatccctgctgacctggctcttcctagccagtccct 556

                                                                       
Query: 357 atcctgctctcaagccttatgtatgcaggaatccaaaggccgtgtcatgtctagcaggcg 416
           |||||||||||||||||||||||||||||||||||||||||||||||         ||||
Sbjct: 557 atcctgctctcaagccttatgtatgcaggaatccaaaggccgtgtca---------ggcg 607

                                                                       
Query: 417 atagattctattttgtgtttttgaagtgttgcatatacagtttaatatgagaacgaatgc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atagattctattttgtgtttttgaagtgttgcatatacagtttaatatgagaacgaatgc 667

                                                  
Query: 477 ttgtctttcaacaggcagaanagaggaagtcactctgta 515
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 ttgtctttcaacaggcagaaaagaggaagtcactctgta 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)