BAC Information

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BAC

Clone NameMSMg01-395H08
Chromosome3 (Build37)
Map Location 30,410,640 - 30,410,996
singlet/doubletsinglet
Overlap genenone
Upstream gene6130401L20Rik, LOC100040676, Evi1, Mds1
Downstream geneLOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395H08.T7 (MSMg01no395_h08.b1)MSMg01-395H08.TJ (MSMg01no395_h08.g1)
ACCAG496271AG496272
length776789
length of high quality
(start - end)
357 (74 - 430)361 (76 - 436)
definitionCHROMAT_FILE: MSMg01no395_h08.b1 PHD_FILE: MSMg01no395_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:19 2005CHROMAT_FILE: MSMg01no395_h08.g1 PHD_FILE: MSMg01no395_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTCCAGTTTTTGGCACCTGGAGACAGCAGAGTATCTTAGAAA
GAAAATTCAAGGTGGAAGATTTCATTTTGCTGGCCACCCTGTGGAGAATA
AAAACAAAACATAGATGTGGGAAGCAGCCACCCTCCTTTCTCACCTCCCC
ATCCACCCTTCTCACTTCCCCAGTTCCGTTCGCCTAGCCCCCAAGGAGTC
TGCCAATACCTGAGTTGGATCTGGTGGAAGTTTCTAAGAAAGGAAGGGAC
CATGTTGCCAAACTCCGAGATTAAGAACAAGACCCACTTGGACTCTGGAC
TTATTTGCGCTTTGAAAGAATAAATCTTGTGGCCGACTGTAGGGTAGGGT
GGTTTCAGTAAAGGGCGAAAGACAGAACCGAATCAACAGTCTCCAAATCA
CCAGATGCCAAGATCTGTCTTTTAAACTCTTACAGAAAGTTGGGATATTA
TGGCAGTGGTAGGTGTTTGGGGTACTCAATCCCTTTTGGGGTTAAAGTCC
CCGTCTTCATCTTTTCATGAATTGGTCTTTTTTCAAGCCTTTCTCATTAT
TTTCCCAAAAACGGGTCGTAACTTTTTCCCTGTTTTTCGTTTCACAACAA
TAGATTTTTTTTTTTCCCCCCCCCCACCTTAATTCATACGCCTTTTCTCC
TTCTTCTTCCAACCTCCAAAATCCCCTGTTTAATTTCTCCCCAAAAATAA
AAACTTTTTCTCTTTTTTACCCCCTA
TTTCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCAGCGAAATTCATTAAATTCTTAGACAAATGG
ATGGAACTAGAAAATATCACCCTGAGTGAGGTAACCCAATCACAAAATAA
CACACATGATATGCACTCACTGATAAGTGGATATTAGGCCAGAAGCTTGG
AATACCTAAGATACAATTCACAGAACAAATGAAGCTCAAGAAGAAGGAAG
ACCAAAGTATGGATACTTCAGTCCTTCTTAGAAGAGGGGGAAAATACCTA
TAGGAGGAGATTCAGAGACAAAGTGTTGTGTGGGGACTAAAGGAAAGGCC
ATCCAGAGACTGCCCCACCTGGGGAACCATCCCATATACAGTCACCAAAC
CCAGACACTATTGTGGACGCCAACAAGTGTTTGCTGATAGGATTCTGATA
TAGCTGTCCCCTGAGAGTCTCTGACAGTGCCTGACAGATATAAAGGTAGA
TGCTCTCAGTTAACCATCAGACTAAGCACAAGGCCTCCCCATGGAGTGCC
CTATAGAAAGGATTGAATGACCTGAAGGCCTCTGTCCCCCCCTACTATTC
GAATATTTTTTTGAACCTTCCCGGTTCTCTCTTTATTTTCTCCGGACCAA
ATTCCCCATCCATCATATTAACTTCGGACGTGACTTCCCGTTTCCCTTTC
CCTTTCTTTCCTATCATACTGCCCCTCTTCCACCTTTTTCTTCCTGCAGT
TTTCTTTTCCCTCTTTTTTTCCCTTACTCCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_h08.b1 MSMg01no395_h08.b1 CHROMAT_FILE:
MSMg01no395_h08.b1 PHD_FILE: MSMg01no395_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:19 2005
         (357 letters)



>mm_chr3_30410440_30411196
          Length = 757

 Score =  667 bits (345), Expect = 0.0
 Identities = 354/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggagacagcagagtatcttagaaagaaaattcaaggtggaagatttcattttgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggagacagcagagtatcttagaaagaaaattcaaggtggaagatttcattttgctgg 260

                                                                       
Query: 61  ccaccctgtggagaataaaaacaaaacatagatgtgggaagcagccaccctcctttctca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaccctgtggagaataaaagcaaaacatagatgtgggaagcagccaccctcctttctca 320

                                                                       
Query: 121 cctccccatccacccttctcacttccccagttccgttcgcctagcccccaaggagtctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccccatccacccttctcacttccccagttccgttcgcctagcccccaaggagtctgc 380

                                                                       
Query: 181 caatacctgagttggatctggtggaagtttctaagaaaggaagggaccatgttgccaaac 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 caatacctgagttggatctggtggaagtttttaagaaaggaagggaccatgttgccaaac 440

                                                                       
Query: 241 tccgagattaagaacaagacccacttggactctggacttatttgcgctttgaaagaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccgagattaagaacaagacccacttggactctggacttatttgcgctttgaaagaataa 500

                                                                    
Query: 301 atcttgtggccgactgtagggtagggtggtttcagtaaagggcgaaagacagaaccg 357
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttgtggctgactgtagggtagggtggtttcagtaaagggcgaaagacagaaccg 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)