BAC Information

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BAC

Clone NameMSMg01-395J07
Chromosome3 (Build37)
Map Location 94,245,787 - 94,246,122
singlet/doubletsinglet
Overlap genenone
Upstream geneTchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3
Downstream geneMrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395J07.T7 (MSMg01no395_j07.b1)MSMg01-395J07.TJ (MSMg01no395_j07.g1)
ACCAG496365AG496366
length789795
length of high quality
(start - end)
338 (71 - 408)423 (85 - 507)
definitionCHROMAT_FILE: MSMg01no395_j07.b1 PHD_FILE: MSMg01no395_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:28 2005CHROMAT_FILE: MSMg01no395_j07.g1 PHD_FILE: MSMg01no395_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCTAAATTTGTGGCCGCTAAACGACTACTAAATCGAGAATATGCGCGG
AATTCCATTTTTTCCTTTGTTTTCCTCCATTCTTTGAAACATCTTATTAT
TTTAAAATTTTTACACGTTTGTATATTTGAGATTATATAATTTTACCCTT
CCTTTTTCTCCTTCTAACCCCTCTCCTCCTCTCTCAGATTCATGGACTCT
TTCCCCTTGTTATTTATATTTGTGTTTATACATTCTTAAATATATAATCT
GCTCAGTCTGTACATTGTTACTTGTACGTATGTATGTTTTCAGGGCTGAC
CATTTCGTATGGGTAACCTTTTGTTGTGCTCTTCCCTGGGGAAGATTATT
TCTCCTGTTCTCAGCATTCTTTTCTTGCCTGTAGCTCTTTGTCTAGGGTT
GAGGCCTTGTGACCCCCCTCCTTTCTCATTAGTATATTAGCATATTAGTG
TCCTCCTTGTTCAGGTCTTGTTTATGTAGCAATGTTTGGAAGAATTCCCA
GATGTAGCGCCCCTGACATTTTTAGGAGACACAATCTTATTATCTACCTT
CCTGTTTCCCTACTTCATATATAATGTTTTGTCTTTTTTTTCTACCACCT
TCCCTTAACTTCGAGATTGTTTTTTTTTTTACACGAGGTATCCATTTCCG
TAATGGGGTTTTTTTATTTTTTCCGCCTTTTAAGAGCAGTTAACTTATTG
TTCCCCCCAACCCCCCCTTTTTTTTTATATTTTTTACTCTTTTCTTTCAT
GACCCCATAATTATATCCCACTTTTCTGTTTCTCACCAA
NNCCGATGATATTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCATCCTAGCAG
CTCGTTCTCCAGTTTTCAGAGCCATGTTTGAACATCAAATGGAGGAGAGA
CTAACCGTGTTGATATCAATGGCCTGGATCCCAAAGTCTTCAAGGAGATG
ATGGGCTTCATTTACACTGGGAAGGCACCACACCTCCACATCCACTCCAT
GGCCTGTGATCTGCTGGCAGCTGCTGACAGGTATGGCCTTGAGGGCTTGA
AGGTCATGTGTGAGGATGCCTTCTGTTTGAACCTCTCTGTGGAGAATGCT
GCACACACTCTCATCTTAGCTGACCTCCACAACATAGAGCAGCTGAAGAC
TCAGGCCCTGGATTTCATTGCACTTCATGCTTCTGAGGTCTCTGAGAACT
CAGAGTGNAAGTCAATGATGGAGTCCCATCCCCACTTGGTGGCTGAAACA
TTCCACTTCCTGGCTTCTGCACAGTGTTTCTTGGAACCCTCAATCAAACA
CCTAAATTAAGTTTAGGGGAATGGAAATCTTTGACCAACTTCTGTTCTTT
CCACAGGTAAAACCCGCGGGGGTTAACACCGAATTTCCGGGAAAAAAACA
AAAATTGGTGGGAACCTTTTTTATGGAACCCCGCGAAAAAAAAACCAGGG
GGGCCCCCGCAATTTAACACACTTGCGTATAGCGTTTAAAGGGCGGGGCG
GGCGGGTCGGGTTTTCTTCTTGACATTTCCCCTATTACTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_j07.b1 MSMg01no395_j07.b1 CHROMAT_FILE:
MSMg01no395_j07.b1 PHD_FILE: MSMg01no395_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:28 2005
         (338 letters)



>mm_chr3_94245787_94246520
          Length = 734

 Score =  557 bits (288), Expect = e-163
 Identities = 323/340 (95%), Gaps = 11/340 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctccattctttgaaacatcttattattttaaaatttttacacgtttgtatatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttcctccattctttgaaacatcttattattttaaaatttttacacgtttgtatatttga 277

                                                                       
Query: 61  gattatataattttacccttcctttttctccttctaacccctctcctcctctctcagatt 120
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gattatataattttac----cctttttctccttctaacccctctcctcctctctcagatt 221

                                                                       
Query: 121 catggactctttccccttgttatttatatttgtgtttatacattcttaaat------ata 174
           |||||||||||||||||||||||||||||||||||||||||||||||||||      |||
Sbjct: 220 catggactctttccccttgttatttatatttgtgtttatacattcttaaatatataaata 161

                                                                       
Query: 175 taatctgctcagtctgtacattgttacttgtacgtatgtatgttttcagggctgaccatt 234
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 160 taatctgctcagtctgtacattcttacttgtacgtatgtatgttttcagggctgatcatt 101

                                                                       
Query: 235 tcgta-tgggtaaccttttgttgtgctcttccctggggaagattatttctcctgttctca 293
           ||||| |||||||||   || |||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tcgtattgggtaaccaactggtgtgctcttccctggggaagattatttctcctgttctca 41

                                                   
Query: 294 gcattcttttcttgcctgtagctctttgtctagggttgag 333
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  gcattcttttcttgcctgtagctctttgtctagggttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 734
Length adjustment: 9
Effective length of query: 329
Effective length of database: 725
Effective search space:   238525
Effective search space used:   238525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)