BAC Information

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BAC

Clone NameMSMg01-395N06
Chromosome3 (Build37)
Map Location 15,547,093 - 15,547,562
singlet/doubletsinglet
Overlap geneLOC668101
Upstream geneLrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1
Downstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395N06.T7 (MSMg01no395_n06.b1)MSMg01-395N06.TJ (MSMg01no395_n06.g1)
ACCAG496550AG496551
length770777
length of high quality
(start - end)
483 (49 - 531)467 (72 - 538)
definitionCHROMAT_FILE: MSMg01no395_n06.b1 PHD_FILE: MSMg01no395_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:47 2005CHROMAT_FILE: MSMg01no395_n06.g1 PHD_FILE: MSMg01no395_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGAT
CCGCGGAATTCCAAAGGTTCTGAGAAGCACCTGAAAAAAATGTTCAACAT
CCTTAATCATTAGGGAAATGCAAATCAGAACAACCCTCAGATTCAACCTT
ACAGCAGTTAGAATGGTAAGATAAAAAATTCAGGTGACAGCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCATCCTCCATTGTTGGTGGGATTG
CAAGCTTGCACAACCACTCTGGAAATCAGTCTTGCAGTTACTCAGAAAAT
AGTTCACAGTACTACAGGAGGATCCAGCAATTATTCTCCTGGACACATAC
CCAGAAGATGTTTCAACTGGTAATAAGGACACATACTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCT
CAACAGAGGAATGGATACAGAAAATGTGGCACATTTACACCATGGGGTAC
TACTCAGCTATTAGAAACAATGAATTTATGAAATTCTTGGGCAAATGGAT
ATATCTGGAGGATATCATCCTGAGTGAGGTAACCCAACAACCAAAGAACT
CACATGACATGCATTCTGCGATAAGCGCATATATCCCTACAACATTAGAT
ACCCCATAATCCATTTGCCAAATACCTGACAATCCGGAAAAAAAAAAATC
CCAGTTTGGGTACTTTCGTTCCTCCTTAAAAAGGGGGAAAAAAAAAAATT
TCGGTAGTGAGTTTCACAAA
CCCCGATGATAGTGGGTATAATTCAGTACAGGACAGTCTTTCCTGATCAT
CAAAGCCCAGGGAATACCGGATCTGAATTGTCAGAGTTGTGAGACTCAGA
GTGACTCAGTAAACTAGGTGCAGTGATGAGAAGACAGATGATATAGGAGA
GTACCCTCACGAGACCAAACCATGTTCAAAGACAGAAACTCAGAAACTGG
CCCACCTGGACATTGGGTATATGTGAATCCATGTTCTTTACCTTGACTCA
ACAAATTTGAACCACAAAGGATAAAATGATAAATATCTGTTGTGTGAAAT
CACAAACTTTATAGGAAAGTATTAATTCAAACATAAAATTAATATAACTC
AGGGTCCAGAGAGGTGATTCATGGATTAATTAAGTTCCTGCTCTTCAAGA
GGACATATTTTATTACATATAATATGATATAAAATTATATTATAATATAT
TTTAATTCCTAAATTTAAACAAAGTTCTTATTTACTTTTTGGATGACATT
ATTCAACCATAAAATCTTAAGCATATCATATATGTGATGGCCAGTTGAGG
CTCCATATTCCCCTTATTACTAATTTTGACATCTTGACTAGGGTCATCCC
TCCTGATTATTGGACATTTCCATTGATAGGATTCAACTTCCTTTCCCAAA
GGGCCCCCTCATTCTATGCTTTTATTCCATATACCCCTCCCTCTTTATTA
ACCCCCCAAGGACCCCCTCTGGTTTTAATACCCACCCCCCCCCCCCCAAG
GTTTTCTGGCATTCCAACTTATTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_n06.g1 MSMg01no395_n06.g1 CHROMAT_FILE:
MSMg01no395_n06.g1 PHD_FILE: MSMg01no395_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:47 2005
         (467 letters)



>mm_chr3_15546836_15547702
          Length = 867

 Score =  708 bits (366), Expect = 0.0
 Identities = 445/478 (93%), Gaps = 19/478 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaattgtcagagttgtgagactcagagtgactcagtaaactaggtgcagtgatgaga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 727 tctgaattgtcagagttgtgagagtcagagtgactcagtaaactaggtgcagtgatgaga 668

                                                                       
Query: 61  agacagatgatataggagagtaccc-tcacgagaccaaaccatgttcaaagacagaaact 119
           ||||| ||||||||||||||||||| | | |||||||||| |||||||||||||||||||
Sbjct: 667 agacaaatgatataggagagtacccttga-gagaccaaactatgttcaaagacagaaact 609

                                                                       
Query: 120 cagaaactggcccacctggacattgggtatatgtgaatccatgttctttaccttgactca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cagaaactggcccacctggacattgggtatatgtgaatccatgttctttaccttgactca 549

                                                                       
Query: 180 acaaa-------tt-tgaaccacaaaggataaaatgataaatatctgttgtgtgaaatca 231
            ||||       || ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 548 ccaaagttgaacttctgaaccacacaggatataatgataaatatctgttgtgtgaaatca 489

                                                                       
Query: 232 caaactttataggaaagtattaat-tcaaacataaaattaatataactcagggtccagag 290
           ||||||||||| |||| |||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 488 caaactttataagaaactatt-atatcaaagataaaattaatataactcagggtccagag 430

                                                                       
Query: 291 aggtgattcatggattaattaagttcctgctcttcaagaggacatattttattacatata 350
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 aggtgattcttggattaattaagctcctgctcttcaagaggacatattttattacatata 370

                                                                       
Query: 351 atatgatata-aaattatattataatatattttaattcctaaatttaaacaaagttctta 409
           || ||||||| |||| ||||||||     |||||||||||||||||||||||||||||||
Sbjct: 369 atgtgatatagaaat-atattata-----ttttaattcctaaatttaaacaaagttctta 316

                                                                     
Query: 410 tttactttttggatgacattattcaaccataaaatcttaagcatatcatatatgtgat 467
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 tttactttttggatgacattattcaaccataaattcttaagcatatcatatatgtgat 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)