BAC Information

Click to search

BAC

Clone NameMSMg01-395O18
Chromosome3 (Build37)
Map Location 126,149,120 - 126,149,503
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395O18.T7 (MSMg01no395_o18.b1)MSMg01-395O18.TJ (MSMg01no395_o18.g1)
ACCAG496622AG496623
length785859
length of high quality
(start - end)
375 (75 - 449)146 (73 - 218)
definitionCHROMAT_FILE: MSMg01no395_o18.b1 PHD_FILE: MSMg01no395_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:55 2005CHROMAT_FILE: MSMg01no395_o18.g1 PHD_FILE: MSMg01no395_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAAT
TCTTTACATTTCCGGGAAAAAAAAATCTCTTATTACTTAAAACCACTTTT
TTTTTTTTTTTTTTCTGCCACCAAACATCCAGAGGCTCCCTTCAAAGAGA
AATAGGATGACGTGTCTGTCAAGGGAACTCGCCATCTCTTATGCAGGAAC
CCATTCTCTATTTTTAGCATTTCCTGATAGGAACAACTCTGTCTAACATC
CATACAGAGAAAAAGGCAAGCACACCGTCTTTCATTATTTTTGCCAGGCA
TTTAGATTTAATATCAGTTGTTTAATGCTATCAATTATTTTTCTTTCCTT
CAAGCTTTCCTGAGAGCTACAGTTACCACAGAATTCCAGCTATGAAACTC
CCAGCTGCCTCGGCGCCCCGCTGTCTCCCTGCTGTCTGTGGGGCGGTGGG
GCCTAAGCAATGCATGGTGCGAAGAGATCCACCTTTCCCTACACTTCGGC
TTGTGCTATGCAGTTCCTGGCATCCTCGCTGGTCTCAAGCTGCACCATTT
TACATCTTCTCAGCAACTGTTTATCCCGACTTCTTTGCTCTGGTTGGTCC
CCCTTCCCCCTACTCCCGCTAATAAGATGGCTAATGGCGGAACAACTCAC
TAACGCATTTAAACTCCCTGTTGCCATCCGTGTAACCCGTTTATAAACCA
GGTTTCCCTCTTTTTTCCCTTCTCTTCCTTTTTGGCCCCCCCTCCCCCTT
TACTTTTCTTTCTCACTATCTTATTCTTCTTTTTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTGGGTAGCCACCGGACACTTTCCTA
ATTGGGTCTGGGGTAGCAAGGGAAGGTTTAGGAGTGCCCAGCCTTTGAGG
TAGGCATGGCAGTTTAAAATTAACTGGCTCTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGAGTCTCCCCCTTTCTTCTCCCACTCTCTTTTTTT
TGCTCCCCCCCCTCTTTTTGCTCTGTTCGTTCCTGTCTCCCCCCTGCCCC
TTGCACCGCGCTTTTCGTGCCCTTGGCCGCCCCCCACGTTTACCCCCCCC
CAAATTTTTTCTTCCCTCCCCCCGCTCATGGCCGCCGTATTTTCTTTCAT
CTTATTTATTTTTCCCCCCCCCCTTTTTCATTTTTTTTTTATTTTTCCTT
TGTCCTCTCCCCGTCTTCCCTTTTTTTTTTATCTCTTGTTTGTCCCTTTT
TCTTTCTTTTTTTCCTGTCCACCTTCTTCACCTTATTTTTTTTATACCCC
CCCTATTCTTTTTTCCCCTTTTTTTTTTTACGTTTTTTCCCCTATTTCTT
TTTATCTTCGCCTCCTTTTTTTTCCCCTAATTTTCGCCTCCTTTACCCTT
TTTTTCCTTTTCCCCCTTCCTCTCTCACTTTCTCTTTTCCCCTTCCCTTC
CCTTCTCCCTTTTCTTTTTTTTTTCCTTCTCCCTCCCTCTATTCTTTATT
TTCTTTTTTACCCTTTTTTTTTGCATTTACCTCCTCTTCTGTTATCCTTA
TTATTCACCCCTTCCCACCCTACGCTTTCCCTTCCCACTTTTTTTCTCCA
TTTCCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_o18.b1 MSMg01no395_o18.b1 CHROMAT_FILE:
MSMg01no395_o18.b1 PHD_FILE: MSMg01no395_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:55 2005
         (375 letters)



>mm_chr3_126148930_126149703
          Length = 774

 Score =  594 bits (307), Expect = e-174
 Identities = 362/385 (94%), Gaps = 11/385 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcttattacttaaaaccactt--ttttttt-------tttt-tttttctgccaccaa 50
           |||| |||||||||||||||||||  |||||||       |||| |||||||||||||||
Sbjct: 191 atcttttattacttaaaaccactttctttttttaattttattttatttttctgccaccaa 250

                                                                       
Query: 51  acatccagaggctcccttcaaagagaaataggatgacgtgtctgtcaagggaactcgcca 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acatccagaggctcccttcaaagagaaataggatgacgtgtctgtcaagggaactcgcca 310

                                                                       
Query: 111 tctcttatgcaggaacccattctctatttttagcatttcctgataggaacaactctgtct 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tctcttatgcaggaacccattctctatttttagcatttcctgataggaacaactctgtct 370

                                                                       
Query: 171 aacatccatacagagaaaaaggcaagcacaccgtctttcattatttttgccaggcattta 230
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 aacatccatacagagaaaaaggcaagcacaccatctttcattatttttgccaggcattta 430

                                                                       
Query: 231 gatttaatatcagttgtttaatgctatcaattatttttctttccttcaagctttcctgag 290
           ||||||||||||| ||  |||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 431 gatttaatatcagctggataatactatcaattatctttctttccttcaagctttcctgag 490

                                                                       
Query: 291 agctacagttaccacagaattccagctatgaaactcccagctgcctcggcgccccgctgt 350
           |||| |||||||||||||||||||||||||||| ||||||||||||||| | || |||||
Sbjct: 491 agcttcagttaccacagaattccagctatgaaattcccagctgcctcggtgtcc-gctgt 549

                                    
Query: 351 ctccctgctgtctgtggggcggtgg 375
           |||||||||||||||||||| ||||
Sbjct: 550 ctccctgctgtctgtggggcagtgg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 774
Length adjustment: 9
Effective length of query: 366
Effective length of database: 765
Effective search space:   279990
Effective search space used:   279990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)