CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATTTTCTTTCTTCCCACCATGCCTCGTGTTCCCTTTTTATTTAATA
TACTTTAAAATGCCTGCCATCGAGTAAAAGATAAAGTCACCTTAATAACA
TGATTATTATTATTATTATTATAACATGGTGATTATTTAAACTCTGCTGC
TATCTATGTGGGAGTATCTTTGAAATATGCATGATGATGAGACACTGATC
CTCAGAAGGGTTTTGTTGTGTGATGGACAAGGGGCACATGCCATCAGAAG
GGCCTAAAAGCTACCATTCTCTCTGCTCCTGGCTTGAAATGGAATCCATT
GTTTTCTCCTACCTGAACTCTCACCCCTGCTTTTTGCCACTAATGTGAGA
TGAACAGCACCAGAACTGAGCCACTGTGCATCACCCTGTGATTGTTTTTT
AAGTTGTCTGTGTCGAATAGTGACAAATCTCAACTAACCCAGAAGGTAAA
TCCACGGTGATGCACGTGGAGGAAAGAAGAAGGGAACTCCGTATGGTCTA
GCCTGACAGGATGCACACCCTAATTTTCCCTGAAAGATTATTTTTAAAAG
AATCTTTTCTTCCCTCCATAATTCTGGGGGCCTGAAAATGGTGCCCGCTG
ACCCCTCACCTTAAAAAAAGGTTTGCTAAAAAAATAAAAAAAATTTGCGC
TTTTTGAAAAAAAAAAAATTAGGGACCCCCTTTTTACACTATATCGTGAA
AGGACCTCCTCTAAAAATTTTTTCTCGGTCCCCTCGGGCCAGAAGGAATT
TTTTTTGCG

CATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTACCTCATTTTA
AAATAGTTTGTTGAGTTCTTTAGATGTGGAGTTAGTTGGTAAAGAGCGTT
CCCCAATCTGTGGGCTGCTGTTTGTCCTACTGACAGTGTCTTTTGCTTTA
CAGAAGCTTTTTAGTATTAATTGTGTGCCTGCACTATTGATGTTCTGTTC
AGGATGTTGTCTTCTGTGCCAATGGGTTCAAGAGTATCCCCCACTTTCTC
TTCAGTGCATCTGGTGTTATGTTGATGTCTTTTCTCCACTTGGGCTTGAA
TTTTGTGCAGGGTGATAGATGTGGATCTATTCACATTCTTCTATATAACA
TCCAGTTAGACCAACACCTTTGGCTGAAGATGTCTCCCCCATTGTATAGT
TCTCGTTTCTTTGTCAAAAATTAAGTGACCCTAGGTGTTTAGATTTACCT
CTACGGCTTCAATTTGATTCCCTGGATCCACATGCCTTTTTTTACGCCTA
TATCATGCGGCTTACCTACCGTTTCCATTAAGAACCCCTCTATTTCCCCT
TCGTTGAATTCCCCTTATGTCCCTTCCTGCCTTAACCTCTATTTACCCCC
CCCGTGTTCTTTTTTTTCTCTTAACCCCTCTTTTATTATCCCTTTTCTCC
CTGTCCCCCTTTATTTTTTTTCTTCTCCCCCTTTTCTCCTTTTTCCCTCC
CTCTTCCCCTCCTTTTTCCCCCTCTTTTTTCTCTTTCTTCTCCTTTCCCC
TTCTCCCTCTTCN

Query= MSMg01no395_o21.b1 MSMg01no395_o21.b1 CHROMAT_FILE:
MSMg01no395_o21.b1 PHD_FILE: MSMg01no395_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:55 2005
         (415 letters)



>mm_chr3_132132130_132132944
          Length = 815

 Score =  671 bits (347), Expect = 0.0
 Identities = 400/439 (91%), Gaps = 35/439 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattttctttcttcccaccatgcctcgtgttccctttttatttaatatacttta 64
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 177 gaattcaattttctttcttcccaccatgcctcgttttccctttttacttaatatacttta 236

                                                                       
Query: 65  aaatgcctgccatcgagtaaaagataa----agtcaccttaataacatgattattattat 120
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 237 aaatgcctgccatcgagtaaaagataattaaagtcaccttaataacatgattattattat 296

                                                                       
Query: 121 tattattat------------------------aacatggtgattatttaaactctgctg 156
           |||||||||                        |||||||||||||||||||||||||||
Sbjct: 297 tattattattattattattattattattattataacatggtgattatttaaactctgctg 356

                                                                       
Query: 157 ctatctatgtgggagtatctttgaaatatgcatgatgatgagacactgatcctcagaagg 216
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctatctatgtgggagtgtctttgaaatatgcatgatgatgagacactgatcctcagaagg 416

                                                                       
Query: 217 gttttgttgtgtgatggacaaggggcacatgccatcagaagggcctaaaagctaccattc 276
           |||||||||||||||||||| ||||||       ||||||||||||||||||||||||||
Sbjct: 417 gttttgttgtgtgatggacacggggca-------tcagaagggcctaaaagctaccattc 469

                                                                       
Query: 277 tctctgctcctggcttgaaatggaatccattgttttctcctacctgaactctcacccctg 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctctgctcctggcttgaaatggaatccattgttttctcctacctgaactctcacccctg 529

                                                                       
Query: 337 ctttttgccactaatgtgagatgaacagcaccagaactgagccactgtgcatcaccctgt 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctttttgccactaatgtgagatgaacagcaccagaactgagccactgtgcatcaccctgt 589

                              
Query: 397 gattgttttttaagttgtc 415
           |||||||||||||||||||
Sbjct: 590 gattgttttttaagttgtc 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)