Query= MSMg01no395_p01.b1 MSMg01no395_p01.b1 CHROMAT_FILE:
MSMg01no395_p01.b1 PHD_FILE: MSMg01no395_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:56 2005
(375 letters)
>mm_chr3_37214007_37214781
Length = 775
Score = 671 bits (347), Expect = 0.0
Identities = 365/371 (98%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagccctgaccataaacccatgtatgtatagcaagttgatttttgataaaggt 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacagcccagag-ataaacccatgtatgtatagcaagttgatttttgataaaggt 264
Query: 65 actaagaacatgcaagaaaaggaatagttgattcaacaggtggtatcaaacagctggaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaagaacatgcaagaaaaggaatagttgattcaacaggtggtatcaaacagctggaca 324
Query: 125 cccacatgtgaaaggacctctgccttacaccatatgtgaaaataagtcccaagtcaatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccacatgtgaaaggacctctgccttacaccatatgtgaaaataagtcccaagtcaatca 384
Query: 185 ttaaataatctatagaattctgaagaaaatcctaggttaaatctgtatgatcctggattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaataatctatagaattctgaagaaaatcctaggttaaatctgtatgatcctggattt 444
Query: 245 gggagtggattctaaatgcaccaccaagagcatgatttgtattaacaaataaatgttaag 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gggagtggattctaaatgcaccaccaagagcatgaacagtattaacaaataaatgttaag 504
Query: 305 ttttaccaaaaatttaccatagaactaaacatttttatgagtcaaaatgcattataaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttaccaaaaatttaccatagaactaaacatttttatgagtcaaaatgcattataaaaa 564
Query: 365 cagaaaagact 375
|||||||||||
Sbjct: 565 cagaaaagact 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_p01.g1 MSMg01no395_p01.g1 CHROMAT_FILE:
MSMg01no395_p01.g1 PHD_FILE: MSMg01no395_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:56 2005
(529 letters)
>mm_chr3_37374194_37375122
Length = 929
Score = 965 bits (499), Expect = 0.0
Identities = 516/529 (97%), Gaps = 12/529 (2%)
Strand = Plus / Minus
Query: 1 caaatatttaaaaattaggcaacatatttctaaatactttatcaaacacttgagctgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caaatatttaaaaattaggcaacatatttctaaatactttatcaaacacttgagctgact 468
Query: 61 aaaaatagaacacatctaaggttttgtgaaacatagggcaatagtttccggagagaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaaaatagaacacatctaaggttttgtgaaacatagggcaatagtttccggagagaaatc 408
Query: 121 tttatcatttgtaaagcttcaagttaataattaaagtaccagccacaaaaatgagaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tttatcatttgtaaagcttcaagttaataattaaagtaccagccacaaaaatgagaaaac 348
Query: 181 aaaatataaaaaaggaagttataagaaagaaataaaattaaatataacaaagcaatagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaaatataaaaaaggaagttataagaaagaaataaaattaaatataacaaagcaatagag 288
Query: 241 aaaaatcagtatagccacagcagtgacatgacagaagaaacttaagaggatggtctagta 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaaaatcagtaaagccacagcagtgacatgacagaagaaacttaagaggatggtctagta 228
Query: 301 aaactgacagaacagaaaaaagacacaaaggagagacaaaaaaaaaaaaagaaagaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 227 aaactgacagaacagaaaaaagacacaaaggagagacaaaaaaaaaa------------a 180
Query: 361 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaagaaagaaagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaagaaagaaagaaa 120
Query: 421 aagaaatctccacccccccaaaaaaaaaaccctgcatgtttacacaaaatcctgccataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aagaaatctccacccccccaaaaaaaaaaccctgcatgtttacacaaaatcctgccataa 60
Query: 481 acatttacaatattatccttcattgcaaaactgatagtttaaatgcctg 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 acatttacaatattatccttcattgcaaaactgatagtttaaatgcctg 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
