BAC Information

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BAC

Clone NameMSMg01-396E04
Chromosome3 (Build37)
Map Location 105,476,245 - 105,476,721
singlet/doubletsinglet
Overlap geneKcnd3
Upstream geneEG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneDdx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396E04.T7 (MSMg01no396_e04.b1)MSMg01-396E04.TJ (MSMg01no396_e04.g1)
ACCAG496881AG496882
length740734
length of high quality
(start - end)		484 (34 - 517)543 (64 - 606)
definitionCHROMAT_FILE: MSMg01no396_e04.b1 PHD_FILE: MSMg01no396_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:20 2005CHROMAT_FILE: MSMg01no396_e04.g1 PHD_FILE: MSMg01no396_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATTAC
TTGCAAAGCTTTAAAATGATGGGAAAAAGGAAAAGTATTGTCATGACCCA
TGACACTTAGAGCCCAAACAGCATCATGAAAAGCATTAGAATCGAGGGAC
AGTGGCTTTGAAAAATGAAACGGCTTTTTAAAGGGGTTCCTTGTGGGTCT
TGTTTTTTATTCAGGATATTCTACGTTTTCTCATCAACTGTTGGAATGAC
TTTTATCTCAGCAGGTTATTTAAACTATGCTGGCTGATGACACGTTAGCC
AGTGCAGGGCACAGACCCAAGTCCTAGGGGACTCCTTGGACCAATGGACT
ATTTTACAAACCAGGGAGGTGGGAGGGATGGTATATTTTTGATAACCAGA
CATTCCAATGTTTTCCTTAGAGGTCATGCGCTCCCATCAATGTTCCTGTG
GAAAACATCAAGTGTGTTCTTTTCTATTTTCGTATACTTATTGGGCTTTG
CTTACCACCATTACTATGGCAAAGAAATACACTGTATAAAACTGCAGGAA
GACAAATGTGAATACTTTCTGTGGGGAAAAAAGCTCTTAAGTTTGCCCTC
TTTTGAAAATGTACTGCAAATGTTATAACATGCATATCATTTACAGTACT
GATCCCCGTGGCACTGCTGTACCTGATGTATCCAATCCTGGATTAAACAA
ATTAAGGTGCCACAGCCCTTCTAGCGACATCTTTTTTTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCTTGGAAATGAATGGTTCATTTGAATCATCTTGGG
AAAGTGTATATTTCTTATTGGAAGTCTTCATTTAAAAATGCTTTTCGGCC
ACCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTTCCCACGG
GACCCTAAGACCTCTGGTGAGTGGAACACAGCGCCTGCCCCAATCCAATC
ACACGGAACTTGAGACTGCGGTACATAGGGAAGCAGGCTACCCGGGCCTG
ATCTGGGGCACAAGTCCCTTCCGCTCGACTCGAGCCCCGGGCTTCCTTGC
CAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACT
GGACCCTAAGACCTCTGGTGAGTGGAACACAGCGCCTGCCCCAATCCAAT
CTCGCGGAACTTGAGACTGCGGTACATAGGGAAGCAGGCTACCCAGGCCT
GATCTGGGGCACAAGTCCCTTCCGCTCGACTCGAGCCCCGGGCTTCCTTG
CCAGCAGAGTCTTGCCCAACACCCGCAAGGGGCCACACGGGACTCCCCAC
GGGATCCTAAGACCTCTGCTGAGTGGAACACAGCGCCTGCCCCAATCCAA
TCACGCGGAACTTGAGACTGCGGGACATAGGGAAGCACGGTACCCGGGGC
CGGATCTGGGGGACAAGGTCCTTTCCATTCGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_e04.b1 MSMg01no396_e04.b1 CHROMAT_FILE:
MSMg01no396_e04.b1 PHD_FILE: MSMg01no396_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:20 2005
         (484 letters)



>mm_chr3_105476041_105476924
          Length = 884

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcattacttgcaaagctttaaaatgatgggaaaaaggaaaagtattgtcatgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattacttgcaaagctttaaaatgatgggaaaaaggaaaagtattgtcatgac 264

                                                                       
Query: 65  ccatgacacttagagcccaaacagcatcatgaaaagcattagaatcgagggacagtggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgacacttagagcccaaacagcatcatgaaaagcattagaatcgagggacagtggct 324

                                                                       
Query: 125 ttgaaaaatgaaacggctttttaaaggggttccttgtgggtcttgttttttattcaggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgaaaaatgaaacggctttttaaaggggttccttgtgggtcttgttttttattcaggat 384

                                                                       
Query: 185 attctacgttttctcatcaactgttggaatgacttttatctcagcaggttatttaaacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attctacgttttctcatcaactgttggaatgacttttatctcagcaggttatttaaacta 444

                                                                       
Query: 245 tgctggctgatgacacgttagccagtgcagggcacagacccaagtcctaggggactcctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctggctgatgacacgttagccagtgcagggcacagacccaagtcctaggggactcctt 504

                                                                       
Query: 305 ggaccaatggactattttacaaaccagggaggtgggagggatggtatatttttgataacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaccaatggactattttacaaaccagggaggtgggagggatggtatatttttgataacc 564

                                                                       
Query: 365 agacattccaatgttttccttagaggtcatgcgctcccatcaatgttcctgtggaaaaca 424
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 agacattccaatgttttccttagaggtcatgcgctcccattaatgttcctgtggaaaaca 624

                                                                    
Query: 425 tcaagtgtgttcttttctattttcgtatacttattgggctttgcttaccaccattac 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaagtgtgttcttttctattttcgtatacttattgggctttgcttaccaccattac 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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